Rosetta 3.3
Variables
test::T200_Scoring Namespace Reference

Variables

tuple pose = pose_from_pdb("test/data/test_fragments.pdb")
tuple scorefxn = create_score_function('standard')
tuple weights = pose.energies()
tuple rsd1 = pose.residue(4)
tuple rsd2 = pose.residue(5)
tuple emap = core.scoring.EMapVector()
list score_types = []
tuple ii = rosetta.core.scoring.ScoreType(i)
tuple hbond_set = rosetta.core.scoring.hbonds.HBondSet()

Variable Documentation

tuple test::T200_Scoring::emap = core.scoring.EMapVector()

Referenced by get_clash_pairs(), and has_clash().

tuple test::T200_Scoring::hbond_set = rosetta.core.scoring.hbonds.HBondSet()
tuple test::T200_Scoring::ii = rosetta.core.scoring.ScoreType(i)

Referenced by utility::arg_greatest_several(), utility::arg_least_several(), utility::arg_max(), utility::arg_min(), check_for_contacts(), utility::in_place_list< T >::clear(), composite_sequences_from_cmd_line(), utility::LexicographicalIterator::continue_at_dimension(), utility::FixedSizeLexicographicalIterator< S >::continue_at_dimension(), create_pseudo_commandline(), destroy_pseudo_commandline(), entity_elements_from_1letterstring(), utility::file_contents(), fill_designable_set(), fill_num_neighbors(), utility::fixedsizearray1< Size, S >::fixedsizearray1(), utility::FixedSizeLexicographicalIterator< S >::FixedSizeLexicographicalIterator(), gen_pep_bb_sequential(), get_n_pep_nbrs(), utility::LexicographicalIterator::index(), utility::FixedSizeLexicographicalIterator< S >::index(), utility::insert_middle(), utility::LexicographicalIterator::LexicographicalIterator(), main(), utility::max(), measure_sequence_recovery(), utility::min(), Mutate1Randomizer::mutate(), utility::LexicographicalIterator::num_states_total(), utility::FixedSizeLexicographicalIterator< S >::num_states_total(), ObjexxFCL::FArray2< double >::operator*=(), utility::LexicographicalIterator::operator++(), utility::FixedSizeLexicographicalIterator< S >::operator++(), utility::fixedsizearray1< Size, S >::operator=(), numeric::kdtree::print_tree(), numeric::random::random_permutation(), numeric::kdtree::KDPoint::read_data(), read_native_sequence_for_entity_elements(), utility::receive_doubles_from_node(), utility::receive_integers_from_node(), utility::in_place_list< T >::resize(), ObjexxFCL::FArray2< double >::right_multiply_by_transpose(), rna_design_test(), run_pep_prep(), RunPepSpec(), save_per_residue_scores(), utility::LexicographicalIterator::set_dimension_sizes(), utility::FixedSizeLexicographicalIterator< S >::set_dimension_sizes(), utility::LexicographicalIterator::set_position_from_index(), and utility::FixedSizeLexicographicalIterator< S >::set_position_from_index().

tuple test::T200_Scoring::pose = pose_from_pdb("test/data/test_fragments.pdb")
tuple test::T200_Scoring::rsd1 = pose.residue(4)
tuple test::T200_Scoring::rsd2 = pose.residue(5)
tuple test::T200_Scoring::scorefxn = create_score_function('standard')
tuple test::T200_Scoring::weights = pose.energies()
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