Rosetta 3.3
Namespaces | Functions | Variables
src/python/apps/public/get_pdb.py File Reference

Namespaces

namespace  get_pdb

Functions

def get_pdb::download_pdb
def get_pdb::check_and_print_pdb

Variables

string get_pdb::remote_host = 'ws0.nrb'
 get_pdb::shit_stat_insres = False
 get_pdb::shit_stat_altpos = False
 get_pdb::shit_stat_modres = False
 dont count MSEs as modiied residues (cos they're so common and get_pdb deal with them previosuly)
 get_pdb::shit_stat_misdns = False
 Is thresidue_letter.
string get_pdb::fastaseq = ""
string get_pdb::pdbfile = ""
list get_pdb::files_to_unlink = []
list get_pdb::pdbname = argv[1]
list get_pdb::chainid = argv[2]
tuple get_pdb::outfile = string.lower(pdbname[0:4])
int get_pdb::nopdbout = 0
int get_pdb::removechain = 0
int get_pdb::ignorechain = 0
string get_pdb::netpdbname = '/net/wwpdb/'
string get_pdb::fixed_pdb = "/work/robetta/src/rosetta_server/fixed_pdbs/"
tuple get_pdb::lines = popen( 'zcat '+netpdbname,'r')
string get_pdb::oldresnum = ' '
int get_pdb::count = 1
string get_pdb::modifiedres = ''
list get_pdb::residue_buffer = []
string get_pdb::residue_letter = ''
 get_pdb::residue_invalid = False
list get_pdb::line = lines[i]
 get_pdb::line_edit = line
 Is it a modified residue ?
 get_pdb::ok = False
list get_pdb::resnum = line_edit[22:27]
 if line_edit[13:14]=='P': #Nucleic acid? Skip.
list get_pdb::insres = line[26]
list get_pdb::altpos = line[16]
list get_pdb::longname = line_edit[17:20]
string get_pdb::flag_altpos = "---"
string get_pdb::flag_insres = "---"
string get_pdb::flag_modres = "---"
string get_pdb::flag_misdns = "---"
tuple get_pdb::nres = len(fastaseq)
string get_pdb::flag_successful = "OK"
tuple get_pdb::outid = open( outfile, 'w')
 get_pdb::fastaid = stdout
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