src/python/bindings/test/T650_LoopsKIC.py File Reference

Namespaces
namespace	test::T650_LoopsKIC
Variables
int	test::T650_LoopsKIC::MAX_KIC_BUILD_ATTEMPTS = 100
tuple	test::T650_LoopsKIC::p = pose_from_pdb( "test/data/2cpl_min.pdb" )
tuple	test::T650_LoopsKIC::starting_p = Pose()
tuple	test::T650_LoopsKIC::scorefxn_low = create_score_function( 'cen_std' )
tuple	test::T650_LoopsKIC::scorefxn_high = create_score_function_ws_patch( 'standard', 'score12' )
tuple	test::T650_LoopsKIC::pymol = rosetta.PyMOL_Mover()
int	test::T650_LoopsKIC::loop_begin = 145
int	test::T650_LoopsKIC::loop_end = 155
int	test::T650_LoopsKIC::loop_cut = 150
tuple	test::T650_LoopsKIC::my_loop = Loop( loop_begin, loop_end, loop_cut )
tuple	test::T650_LoopsKIC::my_loops = Loops()
tuple	test::T650_LoopsKIC::movemap = MoveMap()
tuple	test::T650_LoopsKIC::kic_mover = KinematicMover()
tuple	test::T650_LoopsKIC::to_centroid = SwitchResidueTypeSetMover( 'centroid' )
tuple	test::T650_LoopsKIC::to_fullatom = SwitchResidueTypeSetMover( 'fa_standard' )
tuple	test::T650_LoopsKIC::recover_sidechains = ReturnSidechainMover( starting_p )
tuple	test::T650_LoopsKIC::task_pack = TaskFactory.create_packer_task( starting_p )
tuple	test::T650_LoopsKIC::pack = PackRotamersMover( scorefxn_high, task_pack )
tuple	test::T650_LoopsKIC::mm = MoveMap()
float	test::T650_LoopsKIC::tol = 0.001
string	test::T650_LoopsKIC::min_type = "linmin"
tuple	test::T650_LoopsKIC::linmin_mover = MinMover( mm, scorefxn_low, min_type, tol, True )
tuple	test::T650_LoopsKIC::starting_p_centroid = Pose()
	test::T650_LoopsKIC::success = False
int	test::T650_LoopsKIC::outer_cycles = 10
int	test::T650_LoopsKIC::inner_cycles = 30
float	test::T650_LoopsKIC::init_temp = 2.0
float	test::T650_LoopsKIC::final_temp = 1.0
tuple	test::T650_LoopsKIC::gamma = math.pow( ( final_temp/init_temp ),( 1.0/( outer_cycles*inner_cycles ) ) )
	test::T650_LoopsKIC::kT = init_temp
tuple	test::T650_LoopsKIC::mc = MonteCarlo( p, scorefxn_low, kT )
tuple	test::T650_LoopsKIC::kic_start = randrange( loop_begin, loop_end - 1 )
tuple	test::T650_LoopsKIC::kic_end = randrange( kic_start+2, loop_end+1 )
tuple	test::T650_LoopsKIC::middle_offset = ( kic_end - kic_start )
	test::T650_LoopsKIC::kic_middle = kic_start+middle_offset
tuple	test::T650_LoopsKIC::rms = loop_rmsd( p, starting_p, my_loops )
tuple	test::T650_LoopsKIC::loop_refine = LoopMover_Refine_KIC( my_loops )