Rosetta 3.3
Functions
constraints Namespace Reference

Functions

BooleanOptionKey const constraints ("constraints")
RealOptionKey const CA_tether ("constraints:CA_tether")
BooleanOptionKey const exit_on_bad_read ("constraints:exit_on_bad_read")
StringVectorOptionKey const cst_file ("constraints:cst_file")
RealOptionKey const cst_weight ("constraints:cst_weight")
RealOptionKey const max_cst_dist ("constraints:max_cst_dist")
StringVectorOptionKey const cst_fa_file ("constraints:cst_fa_file")
RealOptionKey const cst_fa_weight ("constraints:cst_fa_weight")
BooleanOptionKey const normalize_mixture_func ("constraints:normalize_mixture_func")
BooleanOptionKey const penalize_mixture_func ("constraints:penalize_mixture_func")
FileOptionKey const forest_file ("constraints:forest_file")
BooleanOptionKey const compute_total_dist_cst ("constraints:compute_total_dist_cst")
IntegerOptionKey const cull_with_native ("constraints:cull_with_native")
FileOptionKey const dump_cst_set ("constraints:dump_cst_set")
IntegerVectorOptionKey const evaluate_max_seq_sep ("constraints:evaluate_max_seq_sep")
BooleanOptionKey const named ("constraints:named")
BooleanOptionKey const no_cst_in_relax ("constraints:no_cst_in_relax")
BooleanOptionKey const no_linearize_bounded ("constraints:no_linearize_bounded")
RealOptionKey const pocket_constraint_weight ("constraints:pocket_constraint_weight")
BooleanOptionKey const pocket_zero_derivatives ("constraints:pocket_zero_derivatives")
BooleanOptionKey const viol ("constraints:viol")
IntegerOptionKey const viol_level ("constraints:viol_level")
StringOptionKey const viol_type ("constraints:viol_type")
RealOptionKey const sog_cst_param ("constraints:sog_cst_param")
BooleanOptionKey const epr_distance ("constraints:epr_distance")
IntegerOptionKey const combine ("constraints:combine")
FileOptionKey const combine_exclude_region ("constraints:combine_exclude_region")
BooleanOptionKey const skip_redundant ("constraints:skip_redundant")
IntegerOptionKey const skip_redundant_width ("constraints:skip_redundant_width")
RealOptionKey const increase_constraints ("constraints:increase_constraints")

Function Documentation

RealOptionKey const constraints::CA_tether ( "constraints:CA_tether"  )
IntegerOptionKey const constraints::combine ( "constraints:combine"  )
FileOptionKey const constraints::combine_exclude_region ( "constraints:combine_exclude_region"  )
BooleanOptionKey const constraints::compute_total_dist_cst ( "constraints:compute_total_dist_cst"  )
BooleanOptionKey const constraints::constraints ( "constraints"  )
StringVectorOptionKey const constraints::cst_fa_file ( "constraints:cst_fa_file"  )

Referenced by main().

RealOptionKey const constraints::cst_fa_weight ( "constraints:cst_fa_weight"  )

Referenced by main().

StringVectorOptionKey const constraints::cst_file ( "constraints:cst_file"  )

Referenced by register_options().

RealOptionKey const constraints::cst_weight ( "constraints:cst_weight"  )
IntegerOptionKey const constraints::cull_with_native ( "constraints:cull_with_native"  )
FileOptionKey const constraints::dump_cst_set ( "constraints:dump_cst_set"  )
BooleanOptionKey const constraints::epr_distance ( "constraints:epr_distance"  )
IntegerVectorOptionKey const constraints::evaluate_max_seq_sep ( "constraints:evaluate_max_seq_sep"  )
BooleanOptionKey const constraints::exit_on_bad_read ( "constraints:exit_on_bad_read"  )
FileOptionKey const constraints::forest_file ( "constraints:forest_file"  )
RealOptionKey const constraints::increase_constraints ( "constraints:increase_constraints"  )
RealOptionKey const constraints::max_cst_dist ( "constraints:max_cst_dist"  )
BooleanOptionKey const constraints::named ( "constraints:named"  )
BooleanOptionKey const constraints::no_cst_in_relax ( "constraints:no_cst_in_relax"  )
BooleanOptionKey const constraints::no_linearize_bounded ( "constraints:no_linearize_bounded"  )
BooleanOptionKey const constraints::normalize_mixture_func ( "constraints:normalize_mixture_func"  )
BooleanOptionKey const constraints::penalize_mixture_func ( "constraints:penalize_mixture_func"  )
RealOptionKey const constraints::pocket_constraint_weight ( "constraints:pocket_constraint_weight"  )
BooleanOptionKey const constraints::pocket_zero_derivatives ( "constraints:pocket_zero_derivatives"  )
BooleanOptionKey const constraints::skip_redundant ( "constraints:skip_redundant"  )
IntegerOptionKey const constraints::skip_redundant_width ( "constraints:skip_redundant_width"  )
RealOptionKey const constraints::sog_cst_param ( "constraints:sog_cst_param"  )
BooleanOptionKey const constraints::viol ( "constraints:viol"  )
IntegerOptionKey const constraints::viol_level ( "constraints:viol_level"  )
StringOptionKey const constraints::viol_type ( "constraints:viol_type"  )
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