basic::options::OptionKeys::run Namespace Reference

Variables
BooleanOptionKey const	run
FileVectorOptionKey const	batches
BooleanOptionKey const	no_prof_info_in_silentout
BooleanOptionKey const	archive
BooleanOptionKey const	shuffle
IntegerOptionKey const	n_cycles
IntegerOptionKey const	repeat
IntegerOptionKey const	max_min_iter
IntegerOptionKey const	maxruntime
BooleanOptionKey const	write_failures
BooleanOptionKey const	clean
BooleanOptionKey const	benchmark
BooleanOptionKey const	test_cycles
BooleanOptionKey const	memory_test_cycles
IntegerOptionKey const	benchmark_scale
BooleanOptionKey const	dry_run
BooleanOptionKey const	debug
BooleanOptionKey const	profile
IntegerOptionKey const	max_retry_job
IntegerOptionKey const	verbosity
BooleanOptionKey const	version
BooleanOptionKey const	nodelay
IntegerOptionKey const	delay
IntegerOptionKey const	random_delay
BooleanOptionKey const	timer
StringOptionKey const	series
StringOptionKey const	protein
StringOptionKey const	chain
BooleanOptionKey const	score_only
BooleanOptionKey const	silent_input
BooleanOptionKey const	decoystats
BooleanOptionKey const	output_hbond_info
RealOptionKey const	wide_nblist_extension
BooleanOptionKey const	status
BooleanOptionKey const	constant_seed
IntegerOptionKey const	jran
BooleanOptionKey const	use_time_as_seed
StringOptionKey const	rng_seed_device
IntegerOptionKey const	seed_offset
StringOptionKey const	rng
IntegerOptionKey const	run_level
StringOptionKey const	verbose
BooleanOptionKey const	silent
BooleanOptionKey const	regions
BooleanOptionKey const	find_disulf
BooleanOptionKey const	rebuild_disulf
BooleanOptionKey const	movie
BooleanOptionKey const	trajectory
BooleanOptionKey const	IUPAC
BooleanOptionKey const	preserve_header
BooleanOptionKey const	evolution
BooleanOptionKey const	suppress_checkpoints
BooleanOptionKey const	checkpoint
BooleanOptionKey const	delete_checkpoints
IntegerOptionKey const	checkpoint_interval
StringOptionKey const	protocol
BooleanOptionKey const	remove_ss_length_screen
StringOptionKey const	min_type
RealOptionKey const	min_tolerance
BooleanOptionKey const	nblist_autoupdate
RealOptionKey const	nblist_autoupdate_narrow
RealOptionKey const	nblist_autoupdate_wide
BooleanOptionKey const	skip_set_reasonable_fold_tree
BooleanOptionKey const	randomize_missing_coords
BooleanOptionKey const	trust_missing_coords
IntegerOptionKey const	cycles_outer
IntegerOptionKey const	cycles_inner
IntegerOptionKey const	repack_rate
BooleanOptionKey const	reinitialize_mover_for_each_job
BooleanOptionKey const	reinitialize_mover_for_new_input
BooleanOptionKey const	multiple_processes_writing_to_one_directory
StringOptionKey const	jobdist_miscfile_ext
BooleanOptionKey const	no_scorefile
BooleanOptionKey const	other_pose_to_scorefile
FileOptionKey const	other_pose_scorefile
BooleanOptionKey const	intermediate_scorefiles
BooleanOptionKey const	intermediate_structures
BooleanOptionKey const	idealize_before_protocol
BooleanOptionKey const	interactive
BooleanOptionKey const	condor
IntegerOptionKey const	nproc
IntegerOptionKey const	proc_id
BooleanOptionKey const	exit_if_missing_heavy_atoms

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Variable Documentation

BooleanOptionKey const basic::options::OptionKeys::run::archive

Referenced by add_rosetta_options_0().

FileVectorOptionKey const basic::options::OptionKeys::run::batches

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::run::benchmark

Referenced by add_rosetta_options_0().

IntegerOptionKey const basic::options::OptionKeys::run::benchmark_scale

Referenced by add_rosetta_options_0(), and main().

StringOptionKey const basic::options::OptionKeys::run::chain

Referenced by add_rosetta_options_0(), AnchorFinderMover::apply(), FloppyTailMover::init_on_new_input(), and APDBCMover::read_in_insert_loop_info().

BooleanOptionKey const basic::options::OptionKeys::run::checkpoint

Referenced by add_rosetta_options_0().

IntegerOptionKey const basic::options::OptionKeys::run::checkpoint_interval

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::run::clean

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::run::condor

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::run::constant_seed

Referenced by add_rosetta_options_0().

IntegerOptionKey const basic::options::OptionKeys::run::cycles_inner

Referenced by add_rosetta_options_0().

IntegerOptionKey const basic::options::OptionKeys::run::cycles_outer

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::run::debug

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::run::decoystats

Referenced by add_rosetta_options_0().

IntegerOptionKey const basic::options::OptionKeys::run::delay

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::run::delete_checkpoints

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::run::dry_run

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::run::evolution

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::run::exit_if_missing_heavy_atoms

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::run::find_disulf

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::run::idealize_before_protocol

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::run::interactive

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::run::intermediate_scorefiles

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::run::intermediate_structures

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::run::IUPAC

Referenced by add_rosetta_options_0().

StringOptionKey const basic::options::OptionKeys::run::jobdist_miscfile_ext

Referenced by add_rosetta_options_0().

IntegerOptionKey const basic::options::OptionKeys::run::jran

Referenced by add_rosetta_options_0().

IntegerOptionKey const basic::options::OptionKeys::run::max_min_iter

Referenced by add_rosetta_options_0().

IntegerOptionKey const basic::options::OptionKeys::run::max_retry_job

Referenced by add_rosetta_options_0().

IntegerOptionKey const basic::options::OptionKeys::run::maxruntime

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::run::memory_test_cycles

Referenced by add_rosetta_options_0().

RealOptionKey const basic::options::OptionKeys::run::min_tolerance

Referenced by add_rosetta_options_0().

StringOptionKey const basic::options::OptionKeys::run::min_type

Referenced by add_rosetta_options_0(), UBQ_E2Mover::apply(), FloppyTailMover::apply(), and main().

BooleanOptionKey const basic::options::OptionKeys::run::movie

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::run::multiple_processes_writing_to_one_directory

Referenced by add_rosetta_options_0().

IntegerOptionKey const basic::options::OptionKeys::run::n_cycles

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::run::nblist_autoupdate

Referenced by add_rosetta_options_0().

RealOptionKey const basic::options::OptionKeys::run::nblist_autoupdate_narrow

Referenced by add_rosetta_options_0().

RealOptionKey const basic::options::OptionKeys::run::nblist_autoupdate_wide

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::run::no_prof_info_in_silentout

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::run::no_scorefile

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::run::nodelay

Referenced by add_rosetta_options_0().

IntegerOptionKey const basic::options::OptionKeys::run::nproc

Referenced by add_rosetta_options_0().

FileOptionKey const basic::options::OptionKeys::run::other_pose_scorefile

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::run::other_pose_to_scorefile

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::run::output_hbond_info

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::run::preserve_header

Referenced by add_rosetta_options_0(), and main().

IntegerOptionKey const basic::options::OptionKeys::run::proc_id

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::run::profile

Referenced by add_rosetta_options_0(), basic::prof_reset(), basic::prof_show(), basic::prof_start_function_body(), and basic::prof_stop_function_body().

StringOptionKey const basic::options::OptionKeys::run::protein

Referenced by add_rosetta_options_0().

StringOptionKey const basic::options::OptionKeys::run::protocol

Referenced by add_rosetta_options_0().

IntegerOptionKey const basic::options::OptionKeys::run::random_delay

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::run::randomize_missing_coords

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::run::rebuild_disulf

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::run::regions

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::run::reinitialize_mover_for_each_job

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::run::reinitialize_mover_for_new_input

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::run::remove_ss_length_screen

Referenced by add_rosetta_options_0().

IntegerOptionKey const basic::options::OptionKeys::run::repack_rate

Referenced by add_rosetta_options_0().

IntegerOptionKey const basic::options::OptionKeys::run::repeat

Referenced by add_rosetta_options_0().

StringOptionKey const basic::options::OptionKeys::run::rng

Referenced by add_rosetta_options_0().

StringOptionKey const basic::options::OptionKeys::run::rng_seed_device

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::run::run

Referenced by add_rosetta_options_0(), and Benchmark::execute().

IntegerOptionKey const basic::options::OptionKeys::run::run_level

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::run::score_only

Referenced by add_rosetta_options_0().

IntegerOptionKey const basic::options::OptionKeys::run::seed_offset

Referenced by add_rosetta_options_0(), numeric::random::RandomGenerator::initializeRandomGenerators(), numeric::random::RandomGenerator::restoreState(), and numeric::random::RandomGenerator::saveState().

StringOptionKey const basic::options::OptionKeys::run::series

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::run::shuffle

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::run::silent

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::run::silent_input

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::run::skip_set_reasonable_fold_tree

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::run::status

Referenced by add_rosetta_options_0(), and utility::exit().

BooleanOptionKey const basic::options::OptionKeys::run::suppress_checkpoints

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::run::test_cycles

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::run::timer

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::run::trajectory

Referenced by add_rosetta_options_0(), main(), and my_main().

BooleanOptionKey const basic::options::OptionKeys::run::trust_missing_coords

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::run::use_time_as_seed

Referenced by add_rosetta_options_0().

StringOptionKey const basic::options::OptionKeys::run::verbose

Referenced by add_rosetta_options_0().

IntegerOptionKey const basic::options::OptionKeys::run::verbosity

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::run::version

Referenced by add_rosetta_options_0().

RealOptionKey const basic::options::OptionKeys::run::wide_nblist_extension

Referenced by add_rosetta_options_0().

BooleanOptionKey const basic::options::OptionKeys::run::write_failures

Referenced by add_rosetta_options_0().