MRMover Class Reference

Inheritance diagram for MRMover:

Collaboration diagram for MRMover:

List of all members.

Public Member Functions
	MRMover ()
virtual std::string	get_name () const
void	pack_missing_sidechains (Pose &pose)
void	fast_loopclose (Pose &pose, protocols::loops::Loops &loops)
void	trim_target_pose (Pose &query_pose, protocols::loops::Loops &loops, core::Size max_gaplength)
void	apply_autorb (Pose &pose)
void	apply_relax (Pose &pose)
void	apply_loopmodel (Pose &pose)
void	apply_threading (Pose &pose, bool superfast=false)
void	apply_makefrags (Pose &pose)
void	apply (Pose &pose)

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Constructor & Destructor Documentation

MRMover::MRMover

(

)

[inline]

References basic::options::OptionKeys::loops::frag_files, basic::options::option, options, and basic::options::OptionKeys::mysql::user.

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Member Function Documentation

void MRMover::apply

(

Pose &

pose

)

[inline]

References basic::Tracer::Error, basic::options::OptionKeys::dna::specificity::mode, basic::options::option, options, and TR.

void MRMover::apply_autorb

(

Pose &

pose

)

[inline]

References basic::options::OptionKeys::nonlocal::moves, and options.

void MRMover::apply_loopmodel

(

Pose &

pose

)

[inline]

References basic::options::OptionKeys::abinitio::debug, basic::options::OptionKeys::jd2::jd2, basic::options::OptionKeys::loops::loop_file, basic::options::OptionKeys::cm::loop_rebuild_filter, basic::options::OptionKeys::cluster::loops, basic::options::OptionKeys::edensity::mapfile, basic::options::OptionKeys::cm::max_loop_rebuild, basic::options::OptionKeys::threadsc::nres, basic::options::option, options, basic::options::OptionKeys::packing::pack_missing_sidechains, PyMOL_demo::pose, basic::options::OptionKeys::loops::relax, basic::options::OptionKeys::loops::remodel, basic::options::OptionKeys::symmetry::symmetry_definition, and basic::options::OptionKeys::mysql::user.

void MRMover::apply_makefrags

(

Pose &

pose

)

[inline]

References basic::options::OptionKeys::in::file::file, basic::options::OptionKeys::loops::frag_files, basic::options::OptionKeys::dna::specificity::frag_files, basic::options::OptionKeys::out::file::frag_prefix, basic::options::OptionKeys::loops::frag_sizes, basic::options::OptionKeys::frags::frag_sizes, color_pdb::i, basic::options::OptionKeys::jd2::jd2, basic::options::OptionKeys::cluster::loops, loops::my_loops, basic::options::OptionKeys::threadsc::nres, basic::options::option, options, runtime_assert, ObjexxFCL::string_of(), basic::options::OptionKeys::mysql::user, and utility_exit_with_message.

void MRMover::apply_relax

(

Pose &

pose

)

[inline]

References basic::options::OptionKeys::jd2::jd2, basic::options::OptionKeys::jumps::jumps, basic::options::OptionKeys::cluster::loops, basic::options::OptionKeys::edensity::mapfile, basic::options::OptionKeys::in::file::movemap, basic::options::option, options, basic::options::OptionKeys::symmetry::symmetry_definition, and basic::options::OptionKeys::mysql::user.

void MRMover::apply_threading	(	Pose &	pose,
		bool	superfast = false
	)		[inline]

References basic::options::OptionKeys::abinitio::debug, basic::options::OptionKeys::jd2::jd2, basic::options::OptionKeys::cm::loop_rebuild_filter, basic::options::OptionKeys::cluster::loops, basic::options::OptionKeys::edensity::mapfile, basic::options::OptionKeys::cm::max_loop_rebuild, loops::my_loops, basic::options::OptionKeys::threadsc::nres, basic::options::option, options, basic::options::OptionKeys::packing::pack_missing_sidechains, PyMOL_demo::pose, basic::options::OptionKeys::loops::relax, basic::options::OptionKeys::loops::remodel, basic::options::OptionKeys::symmetry::symmetry_definition, docking::to_centroid, docking::to_fullatom, basic::options::OptionKeys::mysql::user, and utility_exit_with_message.

void MRMover::fast_loopclose	(	Pose &	pose,
		protocols::loops::Loops &	loops
	)		[inline]

References color_pdb::i, basic::options::OptionKeys::cluster::loops, and docking::to_fullatom.

virtual std::string MRMover::get_name

(

)

const [inline, virtual]

void MRMover::pack_missing_sidechains

(

Pose &

pose

)

[inline]

References color_pdb::i, and make_symmdef_file_denovo::length.

void MRMover::trim_target_pose	(	Pose &	query_pose,
		protocols::loops::Loops &	loops,
		core::Size	max_gaplength
	)		[inline]

References begin, utility::io::oc::cerr, basic::options::OptionKeys::score::saxs::d_min, make_table_of_pilot_apps::f, color_pdb::i, make_symmdef_file_denovo::length, basic::options::OptionKeys::threadsc::nres, options, basic::options::OptionKeys::relax::sequence, and amino_acids::size.

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The documentation for this class was generated from the following file:

• src/apps/public/electron_density/mr_protocols.cc