Namespaces |
namespace | loops |
Variables |
tuple | loops::p = Pose() |
tuple | loops::starting_p = Pose() |
tuple | loops::scorefxn_low = create_score_function('cen_std') |
tuple | loops::scorefxn_high = create_score_function_ws_patch('standard', 'score12') |
int | loops::loop_begin = 77 |
int | loops::loop_end = 85 |
int | loops::cutpoint = 81 |
tuple | loops::my_loop = Loop( loop_begin, loop_end, cutpoint) |
tuple | loops::movemap = MoveMap() |
tuple | loops::fragset3mer = ConstantLengthFragSet(3, "test_in3_fragments") |
tuple | loops::mover_3mer = ClassicFragmentMover(fragset3mer,movemap) |
tuple | loops::ccd_closure = CcdLoopClosureMover(my_loop, movemap) |
tuple | loops::to_centroid = SwitchResidueTypeSetMover('centroid') |
tuple | loops::to_fullatom = SwitchResidueTypeSetMover('fa_standard') |
tuple | loops::recover_sidechains = ReturnSidechainMover(starting_p) |
tuple | loops::task_pack = TaskFactory.create_packer_task(starting_p) |
tuple | loops::pack = PackRotamersMover( scorefxn_high, task_pack ) |
tuple | loops::starting_p_centroid = Pose() |
tuple | loops::jd = Job_dist("loop_output", 100, scorefxn_high) |
int | loops::outer_cycles = 10 |
int | loops::inner_cycles = 30 |
float | loops::init_temp = 2.0 |
float | loops::final_temp = 0.8 |
tuple | loops::gamma = math.pow((final_temp/init_temp),(1.0/(outer_cycles*inner_cycles))) |
| loops::kT = init_temp |
tuple | loops::mc = MonteCarlo(p, scorefxn_low, kT) |
tuple | loops::my_loops = Loops() |
tuple | loops::loop_refine = LoopMover_Refine_CCD(my_loops) |
tuple | loops::Lrms = loop_rmsd(p, starting_p, my_loops, True) |