Rosetta 3.3
Namespace List
Here is a list of all namespaces with brief descriptions:
abinitio
abrelax
amino_acids
AnchoredDesign
AnchoredDesign::akash
AnchoredDesign::filters
AnchoredDesign::testing
antibody
archive
arls
arls_impl
assembly
assign_charges
backrub
basic
basic::database
basic::datacache
basic::options
basic::options::OptionKeys
basic::options::OptionKeys::abinitio
basic::options::OptionKeys::abrelax
basic::options::OptionKeys::AnchoredDesign
basic::options::OptionKeys::AnchoredDesign::akash
basic::options::OptionKeys::AnchoredDesign::filters
basic::options::OptionKeys::AnchoredDesign::testing
basic::options::OptionKeys::AnchoredPDBCreator
basic::options::OptionKeys::antibody
basic::options::OptionKeys::archive
basic::options::OptionKeys::assembly
basic::options::OptionKeys::backrub
basic::options::OptionKeys::batch_relax
basic::options::OptionKeys::bbg
basic::options::OptionKeys::blivens
basic::options::OptionKeys::blivens::disulfide_scorer
basic::options::OptionKeys::boinc
basic::options::OptionKeys::broker
basic::options::OptionKeys::canonical_sampling
basic::options::OptionKeys::canonical_sampling::out
basic::options::OptionKeys::canonical_sampling::probabilities
basic::options::OptionKeys::canonical_sampling::sampling
basic::options::OptionKeys::casp
basic::options::OptionKeys::chemical
basic::options::OptionKeys::chrisk
basic::options::OptionKeys::chunk
basic::options::OptionKeys::cluster
basic::options::OptionKeys::cm
basic::options::OptionKeys::constraints
basic::options::OptionKeys::corrections
basic::options::OptionKeys::corrections::chemical
basic::options::OptionKeys::corrections::score
basic::options::OptionKeys::crossmatch
basic::options::OptionKeys::ddg
basic::options::OptionKeys::DenovoProteinDesign
basic::options::OptionKeys::dna
basic::options::OptionKeys::dna::design
basic::options::OptionKeys::dna::design::reversion
basic::options::OptionKeys::dna::design::specificity
basic::options::OptionKeys::dna::specificity
basic::options::OptionKeys::docking
basic::options::OptionKeys::docking::ligand
basic::options::OptionKeys::docking::ligand::grid
basic::options::OptionKeys::docking::symmetry
basic::options::OptionKeys::DomainAssembly
basic::options::OptionKeys::dwkulp
basic::options::OptionKeys::edensity
basic::options::OptionKeys::enzdes
basic::options::OptionKeys::evaluation
basic::options::OptionKeys::evolution
basic::options::OptionKeys::fast_loops
basic::options::OptionKeys::features
basic::options::OptionKeys::filters
basic::options::OptionKeys::fingerprint
basic::options::OptionKeys::fldsgn
basic::options::OptionKeys::flexpack
basic::options::OptionKeys::flexpack::annealer
basic::options::OptionKeys::flexPepDocking
basic::options::OptionKeys::flxbb
basic::options::OptionKeys::flxbb::layer
basic::options::OptionKeys::fold_and_dock
basic::options::OptionKeys::fold_cst
basic::options::OptionKeys::fold_from_loops
basic::options::OptionKeys::frags
basic::options::OptionKeys::frags::nonlocal
basic::options::OptionKeys::frags::picking
basic::options::OptionKeys::frags::scoring
basic::options::OptionKeys::holes
basic::options::OptionKeys::hotspot
basic::options::OptionKeys::in
basic::options::OptionKeys::in::file
basic::options::OptionKeys::in::matdes_design
basic::options::OptionKeys::in::matdes_dock
basic::options::OptionKeys::in::path
basic::options::OptionKeys::in::rdf
basic::options::OptionKeys::inout
basic::options::OptionKeys::james
basic::options::OptionKeys::jd2
basic::options::OptionKeys::jumps
basic::options::OptionKeys::krassk
basic::options::OptionKeys::lh
basic::options::OptionKeys::loopfcst
basic::options::OptionKeys::LoopModel
basic::options::OptionKeys::loops
basic::options::OptionKeys::lp
basic::options::OptionKeys::match
basic::options::OptionKeys::matdes
basic::options::OptionKeys::matdes::design
basic::options::OptionKeys::matdes::dock
basic::options::OptionKeys::mc
basic::options::OptionKeys::membrane
basic::options::OptionKeys::mike
basic::options::OptionKeys::MM
basic::options::OptionKeys::MonteCarlo
basic::options::OptionKeys::motifs
basic::options::OptionKeys::ms
basic::options::OptionKeys::ms::checkpoint
basic::options::OptionKeys::murphp
basic::options::OptionKeys::mysql
basic::options::OptionKeys::nonlocal
basic::options::OptionKeys::optE
basic::options::OptionKeys::optE::rescore
basic::options::OptionKeys::optimization
basic::options::OptionKeys::orbitals
basic::options::OptionKeys::out
basic::options::OptionKeys::out::file
basic::options::OptionKeys::out::path
basic::options::OptionKeys::packing
basic::options::OptionKeys::packing::ex1
basic::options::OptionKeys::packing::ex1aro
basic::options::OptionKeys::packing::ex1aro_exposed
basic::options::OptionKeys::packing::ex2
basic::options::OptionKeys::packing::ex2aro
basic::options::OptionKeys::packing::ex2aro_exposed
basic::options::OptionKeys::packing::ex3
basic::options::OptionKeys::packing::ex4
basic::options::OptionKeys::packing::exdna
basic::options::OptionKeys::packstat
basic::options::OptionKeys::parser
basic::options::OptionKeys::patterson
basic::options::OptionKeys::PCS
basic::options::OptionKeys::pepspec
basic::options::OptionKeys::pH
basic::options::OptionKeys::pH::calc_pka
basic::options::OptionKeys::phil
basic::options::OptionKeys::pocket_grid
basic::options::OptionKeys::pose_metrics
basic::options::OptionKeys::qsar
basic::options::OptionKeys::RBSegmentRelax
basic::options::OptionKeys::rdc
basic::options::OptionKeys::relax
basic::options::OptionKeys::remodel
basic::options::OptionKeys::remodel::design
basic::options::OptionKeys::remodel::domainFusion
basic::options::OptionKeys::remodel::RemodelLoopMover
basic::options::OptionKeys::resample
basic::options::OptionKeys::rescore
basic::options::OptionKeys::residues
basic::options::OptionKeys::rna
basic::options::OptionKeys::robert
basic::options::OptionKeys::rot_anl
basic::options::OptionKeys::run
basic::options::OptionKeys::score
basic::options::OptionKeys::score::saxs
basic::options::OptionKeys::smhybrid
basic::options::OptionKeys::SSrbrelax
basic::options::OptionKeys::symmetry
basic::options::OptionKeys::templates
basic::options::OptionKeys::templates::cst
basic::options::OptionKeys::templates::fragsteal
basic::options::OptionKeys::threadsc
basic::options::OptionKeys::ufv
basic::options::OptionKeys::ufv::insert
basic::options::OptionKeys::wum
basic::svd
batch_relax
bbg
best_ifaceE
blivens
blivens::disulfide_scorer
boinc
boost
broker
BuildBindings
canonical_sampling
canonical_sampling::out
canonical_sampling::probabilities
canonical_sampling::sampling
casp
chemical
chrisk
chunk
cluster
cm
color_pdb
color_pdb_byatom
constraints
core
core::kinematicsSee AtomTree overview and FoldTree overview for details
corrections
corrections::chemical
corrections::score
crossmatch
dddm
ddg
DenovoProteinDesign
dna
dna::design
dna::design::reversion
dna::design::specificity
dna::specificity
docking
docking::ligand
docking::ligand::grid
docking::symmetry
DomainAssembly
dwkulp
edensity
enzdes
evaluation
evolution
exclude
fast_loops
filters
fingerprint
fldsgn
flexpack
flexpack::annealer
flexPepDocking
flxbb
flxbb::layer
fold_and_dock
fold_cst
fold_from_loops
fork_example
frags
frags::nonlocal
frags::picking
frags::scoring
get_pdb
get_scores
holes
hotspot
in
in::file
in::matdes_design
in::matdes_dock
in::path
in::rdf
inout
io
james
jd2
jumps
krassk
lh
loopfcst
LoopModel
loops
loops_from_density
loops_kic
make_static_database
make_symmdef_file_denovo
make_table_of_pilot_apps
make_templates
match
matdes
matdes::design
matdes::dock
mc
membrane
MM
molfile_to_params
MonteCarlo
motifs
ms
ms::checkpoint
murphp
mysql
NetLink
nonlocal
numericA 1D histogram based upon a map structure
numeric::constants
numeric::constants::d
numeric::constants::f
numeric::constants::ld
numeric::constants::r
numeric::conversions
numeric::deriv
numeric::fourier
numeric::geometry
numeric::histograms
numeric::interpolation
numeric::interpolation::full
numeric::interpolation::full::bin_density
numeric::interpolation::full::bin_width
numeric::interpolation::periodic_range
numeric::interpolation::periodic_range::full
numeric::interpolation::periodic_range::half
numeric::interpolation::periodic_range::periodic_value
numeric::interpolation::periodic_range::periodic_value::full
numeric::interpolation::periodic_range::periodic_value::half
numeric::interpolation::spline
numeric::kdtree
numeric::model_quality
numeric::random
numeric::statistics
ObjexxFCLObjexx Fortran Compatibility Library
ObjexxFCL::bit
ObjexxFCL::fmt
ObjexxFCL::Fortran
ObjexxFCL::internal
ObjexxFCL::internal::ObserverMediator
optE
optE::rescore
optimization
options
options_class
options_rosetta
orbitals
out
out::file
out::path
packing
packing::ex1
packing::ex1aro
packing::ex1aro_exposed
packing::ex2
packing::ex2aro
packing::ex2aro_exposed
packing::ex3
packing::ex4
packing::exdna
packstat
parallel
parser
patterson
PCS
pdb2fasta
pdb_to_molfile
pepspec
pH
pH::calc_pka
phil
platformFixed size types
platform::file
pocket_grid
pose_metrics
prune_atdiff_top5pct
PyMOL_demo
PyMOLPyRosettaServer
PyRosetta-PyMol
qsar
RBSegmentRelax
rdc
relax
remodel
remodel::design
remodel::domainFusion
remodel::RemodelLoopMover
resample
rescore
residues
revert_app
rmsd_score_pymol_plotter
rna
robert
rosetta_py
rosetta_py::io
rosetta_py::io::mdl_molfile
rosetta_py::io::pdb
rosetta_py::utility
rosetta_py::utility::ForkManager
rosetta_py::utility::r3
rosetta_py::utility::rankorder
rot_anl
run
score
score::saxs
score_app
sd
sequence_recovery
SetLibPaths
smhybrid
src
src::protocols
SSrbrelax
stdSTL namespace
symmetry
templates
templates::cst
templates::fragsteal
test
test::T000_Imports
test::T005_Bindings
test::T010_LoadPDB
test::T100_Basic
test::T200_Scoring
test::T400_Refinement
test::T500_Packing
test::T600_Docking
test::T650_LoopsKIC
test::T660_LoopBuilding
test::T700_FoldTree
test::T800_ClassicRelax
test::T850_SubClassing
test::T900_Other
TestBindings
threadsc
tools
tools::CppParser
tools::dox_extract
tools::doxygen
tools::DoxygenExtractorPyPP
ufv
ufv::insert
utilityUnresizable vector whose size is known at compile time, which may be allocated on the stack, and which indexes from 1
utility::excn
utility::factoryA pluggable class factory system
utility::file
utility::ioFile stream I/O classes, primarily for compressed data
utility::io::ic
utility::io::mpi_stream
utility::io::oc
utility::keysKeys and key-accessed containers for fast, safe object lookup
utility::keys::lookup
utility::optionsProgram options system
utility::options::OptionKeys
utility::options::OptionKeys::optionsOption display option keys
utility::options::OptionKeys::options::table
utility::pointer
utility::query
utility::query::filter_operators
utility::query::metric_operators
utility::signals
utility::sql_database
utility::tag
utility::tools
wum
yaml
yaml::composer
yaml::constructor
yaml::cyaml
yaml::dumper
yaml::emitter
yaml::error
yaml::events
yaml::loader
yaml::nodes
yaml::parser
yaml::reader
yaml::representer
yaml::resolver
yaml::scanner
yaml::serializer
yaml::tokens
zlib_stream
zlib_stream::detail
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