Related Pages

Here is a list of all related documentation pages:

• Locations Of Files In Rosetta This page lists the trees of directories of each individula applications and scripts in Rosetta
• Energy Terms In Rosetta We will intoduce couple of typical Rosetta weights files in this page to let you have a basic idea about energy terms in Rosetta
• Command lines collection for pilot/public applications
• Documentation for dna interface design application
• Documentation for the Flexible Peptide Docking application (initial version)
• Documentation for hotspot_hashing application
• Documentation for hotspot hashing utility application
• for multi_residue_ligand_dock
• Documentation for dna interface multistate design genetic algorithm application
• Pilot Application Information Page
• Documentation of the residue_energy_breakdown utility
• Documentation for ab initio protein structure modeling application (AbinitioRelax)
• Documentation for InterfaceAnalyzer application
• Commands for the scoring application
• Dock Design Parser Applications
• Documentation for the backrub application
• Boinc minirosetta application usage and overview
• Commands for the cluster application
• Documentation comparative modeling of protein structures
• Documentation for ddg_monomer application
• Documentation for the fixed backbone design application, "fixbb"
• Documentation for using the fixed backbone design application, "fixbb", with the 'hpatch' solubility score term
• Documentation for the mpi_msd application for performing multistate design and distributing the load with MPI, "mpi_msd"
• Documentation for Docking protocol and application
• Documentation for the enzdes application
• Documentation for the enzyme design application
• Documentation for the extract_atomtree_diffs application
• Documentation for the FlexPepDock application
• Documentation for fold-and-dock application
• Documentation for fragment-based loop modeling
• Fragment picking documentation for <code>picker</code> application
• Documentation for AnchoredDesign application
• Documentation for AnchoredPDBCreator application
• AnchorFinder
• Documentation for kinematic loop modeling
• Documentation for the ligand_dock application
• Documentation for the loop modeling application
• Documentation for the Symmetry Definiton file creation script.
• Documentation for the Denovo Symmetry Definiton file creation script.
• Documentation for the matcher
• Documentation for the geometric constraint file format used to specify interaction geometries for matching and enzyme design
• Documentation for membrane ab initio modeling application
• Documentation for mr_protocols application
• Documentation for pepspec application
• Documentation for the prepare_template_for_MR companion script.
• Commands for the relax application
• Documentation for RNA 3D structure modeling: <em>rna_denovo</em>, <em>rna_database</em>, and <em>rna_extract</em> applications
• Documentation for RNA 3D design: <em>rna_design</em>
• Documentation for RosettaDNA application
• Documentation for ca_to_allatom application
• Documentation for FloppyTail application
• Documentation for loops_from_density application
• Documentation for UBQ_E2_thioester application
• Documentation for the sequence_recovery application
• Documentation for the sequence_tolerance application
• Documentation for symmetric docking application
• Reviewer's Template
• Documentation for AppName application
• Build Rosetta
• A Guide to Developing in Rosetta
• List of things you should check in your code before committing it in to svn
• Guidlines on Owning pointers usage
• A Guide to Running and Writing Tests for Rosetta
• A Guide to Using SCons to Build Rosetta
• A Guide to Using Subversion on the Command Line
• Writing a Rosetta Application
• How to use Rosetta Options and the command line
• Fragments Directory
• core::fragment::picking_old User's Guide.
• AtomTree overview and concepts
• FoldTree overview and concepts
• Movemap file format
• Minimization overview and concepts
• How to use the PackerTask
• How to write new resfile commands
• Resfile syntax and conventions
• Constraint File Instructions
• Scoring Structures with Electron Density
• Hydrogen Bond Energy Term
• How to add a new scoring term.
• Symmetry User's Guide.
• Tracer, tool for debug IO
• Get Database
• Score With Fullatom Energy In Condor Environment
• Scoring Structures with Electron Density
• An Introduction to Important Rosetta Concepts
• Numeric Library
• ObjexxFCL Library
• options
• How to prepare structures for use in Rosetta
• Simple Protocol Walkthrough
• New job distributor README
• Changes Need to Achieve Protein and RNA compatability in Rosetta
• How to make mini robust against malformed PDBs
• A Guide to the Structure of the Rosetta Library
• An overview page for the src directory of the Rosetta
• Template page for Subdirectories of Libraries
• Tips for writing doxygen documentation
• Template Doxygen Page for Documenting an Application
• Template Doxygen Page for New Category of Source Files
• Mover test HowTo
• Different way to run unit tests.
• How to create and run scientific tests
• Unit test and Performance test Mini Rosetta Documentation
• UTracer tool for simplifying writings of unit tests
• Interface for SQLite3 Database Library
• Utility Library
• How to write your own protocols in Rosetta
• Chemical Shift File
• Sequence Fasta File
• Using Fragments Files in Rosetta
• Loop File
• Resfile syntax
• Silent File
• Applications General Information
• Docking Options
• Input Options
• Loop Modeling Options
• Output Options
• Rotamer Packing Options
• Structural Refinement Options
• Run Options
• Score Function Options
• Platforms Information
• How to use the PyMOL-Rosetta server
• Install SCons
• Todo List
• Deprecated List