Rosetta 3.4
Classes | Typedefs | Functions
protocols::forge::remodel Namespace Reference

Classes

class  RemodelAccumulator
class  RemodelConstraintGenerator
 pure virtual base class More...
struct  LineObject
class  RemodelData
class  RemodelDesignMover
class  RemodelEnzdesCstModule
class  RemodelLoopMover
 Loop modeling protocol based on routines from Remodel and EpiGraft packages in Rosetta++. More...
class  RemodelLoopMoverCreator
class  RemodelMover
class  RemodelMoverCreator
class  RemodelRotamerLinks
class  RemodelRotamerLinksCreator
class  WorkingRemodelSet
class  Segment
class  ResidueVicinityInfo
 small helper class for the ResidueVicinityRCG More...
class  ResidueVicinityRCG
 a RemodelConstraintGenerator that creates AmbiguousMultiConstraints for all positions More...

Typedefs

typedef
utility::pointer::owning_ptr
< RemodelConstraintGenerator
RemodelConstraintGeneratorOP
typedef
utility::pointer::owning_ptr
< RemodelConstraintGenerator
const > 
RemodelConstraintGeneratorCOP
typedef
utility::pointer::access_ptr
< RemodelConstraintGenerator
RemodelConstraintGeneratorAP
typedef
utility::pointer::access_ptr
< RemodelConstraintGenerator
const > 
RemodelConstraintGeneratorCAP
typedef
utility::pointer::owning_ptr
< RemodelEnzdesCstModule
RemodelEnzdesCstModuleOP
typedef
utility::pointer::access_ptr
< RemodelLoopMover
RemodelLoopMoverAP
 access pointer for RemodelLoopMover
typedef
utility::pointer::access_ptr
< RemodelLoopMover const > 
RemodelLoopMoverCAP
 const access pointer for RemodelLoopMover
typedef
utility::pointer::owning_ptr
< RemodelLoopMover
RemodelLoopMoverOP
 owning pointer for RemodelLoopMover
typedef
utility::pointer::owning_ptr
< RemodelLoopMover const > 
RemodelLoopMoverCOP
 const owning pointer for RemodelLoopMover
typedef
utility::pointer::owning_ptr
< RemodelMover
RemodelMover_OP
 RemodelMover owning pointer.
typedef
utility::pointer::owning_ptr
< RemodelMover const > 
RemodelMover_COP
 RemodelMover const owning pointer.
typedef
utility::pointer::access_ptr
< RemodelMover
RemodelMover_AP
 RemodelMover access pointer.
typedef
utility::pointer::access_ptr
< RemodelMover const > 
RemodelMover_CAP
 RemodelMover const access pointer.
typedef
utility::pointer::owning_ptr
< RemodelRotamerLinks
RemodelRotamerLinksOP
typedef
utility::pointer::owning_ptr
< ResidueVicinityRCG
ResidueVicinityRCGOP
typedef
utility::pointer::access_ptr
< ResidueVicinityRCG const > 
ResidueVicinityRCGCAP
typedef
utility::pointer::owning_ptr
< ResidueVicinityInfo
ResidueVicinityInfoOP
typedef
utility::pointer::owning_ptr
< ResidueVicinityInfo const > 
ResidueVicinityInfoCOP

Functions

static basic::Tracer TR ("protocols.forge.remodel.RemodelAccumulator")
static basic::Tracer TR_REMODEL ("REMODELd")
static basic::Tracer TR ("protocols.forge.remodel.RemodelDesignMover")
static
numeric::random::RandomGenerator 
RG (2342342)
void run_calculator (core::pose::Pose const &pose, std::string const &calculator, std::string const &calculation, utility::vector1_bool &residues)
static basic::Tracer TR ("protocols.forge.remodel.RemodelEnzdesCstModule")
static basic::Tracer TR ("protocols.forge.remodel.RemodelLoopMover")
static
numeric::random::RandomGenerator 
RG (9788221)
static basic::Tracer TR ("protocols.forge.remodel.RemodelMover")
static basic::Tracer TR ("protocols.forge.remodel.RemodelRotamerLinks", t_info)
static basic::Tracer TR ("REMODELw")

Typedef Documentation

access pointer for RemodelLoopMover

const access pointer for RemodelLoopMover

const owning pointer for RemodelLoopMover

owning pointer for RemodelLoopMover

RemodelMover access pointer.

RemodelMover const access pointer.

RemodelMover const owning pointer.

RemodelMover owning pointer.


Function Documentation

static numeric::random::RandomGenerator protocols::forge::remodel::RG ( 2342342  ) [static]
static numeric::random::RandomGenerator protocols::forge::remodel::RG ( 9788221  ) [static]
void protocols::forge::remodel::run_calculator ( core::pose::Pose const &  pose,
std::string const &  calculator,
std::string const &  calculation,
utility::vector1_bool &  residues 
)
static basic::Tracer protocols::forge::remodel::TR ( "protocols.forge.remodel.RemodelMover"  ) [static]
static basic::Tracer protocols::forge::remodel::TR ( "protocols.forge.remodel.RemodelRotamerLinks"  ,
t_info   
) [static]
static basic::Tracer protocols::forge::remodel::TR ( "protocols.forge.remodel.RemodelLoopMover"  ) [static]
static basic::Tracer protocols::forge::remodel::TR ( "protocols.forge.remodel.RemodelEnzdesCstModule"  ) [static]
static basic::Tracer protocols::forge::remodel::TR ( "protocols.forge.remodel.RemodelAccumulator"  ) [static]

Referenced by protocols::forge::remodel::RemodelMover::apply(), protocols::forge::remodel::RemodelLoopMover::apply(), protocols::forge::remodel::RemodelEnzdesCstModule::apply(), protocols::forge::remodel::RemodelDesignMover::apply(), protocols::forge::remodel::RemodelEnzdesCstModule::blueprint_cst_definition(), protocols::forge::remodel::RemodelLoopMover::boost_closure_stage(), protocols::forge::remodel::RemodelLoopMover::check_closure_criteria(), protocols::forge::remodel::RemodelDesignMover::check_state(), protocols::forge::remodel::RemodelMover::confirm_sequence(), protocols::forge::remodel::RemodelEnzdesCstModule::enable_constraint_scoreterms(), protocols::forge::remodel::RemodelDesignMover::find_disulfides_in_the_neighborhood(), protocols::forge::remodel::RemodelLoopMover::independent_stage(), protocols::forge::remodel::RemodelDesignMover::make_disulfide(), protocols::forge::remodel::RemodelDesignMover::mode1_packertask(), protocols::forge::remodel::RemodelDesignMover::mode2_packertask(), protocols::forge::remodel::RemodelDesignMover::mode3_packertask(), protocols::forge::remodel::RemodelDesignMover::mode4_packertask(), protocols::forge::remodel::RemodelDesignMover::mode5_packertask(), protocols::forge::remodel::RemodelDesignMover::mode6_packertask(), protocols::forge::remodel::RemodelLoopMover::randomize_stage(), protocols::forge::remodel::RemodelDesignMover::reduce_task(), protocols::forge::remodel::RemodelMover::RemodelMover(), protocols::forge::remodel::RemodelLoopMover::simultaneous_stage(), and protocols::forge::remodel::WorkingRemodelSet::workingSetGen().

static basic::Tracer protocols::forge::remodel::TR ( "REMODELw"  ) [static]
static basic::Tracer protocols::forge::remodel::TR ( "protocols.forge.remodel.RemodelDesignMover"  ) [static]
static basic::Tracer protocols::forge::remodel::TR_REMODEL ( "REMODELd"  ) [static]
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