Rosetta 3.4
Public Types | Public Member Functions
core::scoring::rna::RNA_SugarCloseEnergy Class Reference

#include <RNA_SugarCloseEnergy.hh>

Inheritance diagram for core::scoring::rna::RNA_SugarCloseEnergy:
Inheritance graph
[legend]
Collaboration diagram for core::scoring::rna::RNA_SugarCloseEnergy:
Collaboration graph
[legend]

List of all members.

Public Types

typedef
core::scoring::methods::ContextIndependentOneBodyEnergy 
parent

Public Member Functions

 RNA_SugarCloseEnergy ()
 ctor
virtual ~RNA_SugarCloseEnergy ()
 dtor
virtual
core::scoring::methods::EnergyMethodOP 
clone () const
 clone
virtual void residue_energy (conformation::Residue const &rsd, EnergyMap &emap) const
virtual void residue_energy (conformation::Residue const &rsd, pose::Pose const &, EnergyMap &emap) const
 Evaluate the one-body energies for a particular residue, in the context of a given Pose, and increment those energies in the input Emap (do not overwrite them).
virtual void setup_for_derivatives (pose::Pose &pose, ScoreFunction const &) const
 Called immediately before atom- and DOF-derivatives are calculated allowing the derived class a chance to prepare for future calls.
virtual void eval_atom_derivative (id::AtomID const &id, pose::Pose const &pose, kinematics::DomainMap const &, ScoreFunction const &sfxn, EnergyMap const &weights, Vector &F1, Vector &F2) const
 ////////////////////////////////////////////////////////////////////////////
virtual void indicate_required_context_graphs (utility::vector1< bool > &) const
 RNA_SugarCloseEnergy is context independent; indicates that no context graphs are required.
void setup_sugar_ring_closure_constraints (pose::Pose &pose) const
void add_sugar_ring_closure_constraints (conformation::Residue const &rsd, constraints::ConstraintSet &cst_set) const

Member Typedef Documentation


Constructor & Destructor Documentation

core::scoring::rna::RNA_SugarCloseEnergy::RNA_SugarCloseEnergy ( )

ctor

Referenced by clone().

core::scoring::rna::RNA_SugarCloseEnergy::~RNA_SugarCloseEnergy ( ) [virtual]

dtor


Member Function Documentation

void core::scoring::rna::RNA_SugarCloseEnergy::add_sugar_ring_closure_constraints ( conformation::Residue const &  rsd,
constraints::ConstraintSet cst_set 
) const
methods::EnergyMethodOP core::scoring::rna::RNA_SugarCloseEnergy::clone ( ) const [virtual]
void core::scoring::rna::RNA_SugarCloseEnergy::eval_atom_derivative ( id::AtomID const &  id,
pose::Pose const &  pose,
kinematics::DomainMap const &  ,
ScoreFunction const &  sfxn,
EnergyMap const &  weights,
Vector F1,
Vector F2 
) const [virtual]

////////////////////////////////////////////////////////////////////////////

Reimplemented from core::scoring::methods::EnergyMethod.

void core::scoring::rna::RNA_SugarCloseEnergy::indicate_required_context_graphs ( utility::vector1< bool > &  ) const [virtual]

RNA_SugarCloseEnergy is context independent; indicates that no context graphs are required.

Implements core::scoring::methods::EnergyMethod.

void core::scoring::rna::RNA_SugarCloseEnergy::residue_energy ( conformation::Residue const &  rsd,
EnergyMap emap 
) const [virtual]
void core::scoring::rna::RNA_SugarCloseEnergy::residue_energy ( conformation::Residue const &  rsd,
pose::Pose const &  pose,
EnergyMap emap 
) const [virtual]

Evaluate the one-body energies for a particular residue, in the context of a given Pose, and increment those energies in the input Emap (do not overwrite them).

Implements core::scoring::methods::ContextIndependentOneBodyEnergy.

References residue_energy().

void core::scoring::rna::RNA_SugarCloseEnergy::setup_for_derivatives ( pose::Pose pose,
ScoreFunction const &  sfxn 
) const [virtual]

Called immediately before atom- and DOF-derivatives are calculated allowing the derived class a chance to prepare for future calls.

default implementation noop

Reimplemented from core::scoring::methods::EnergyMethod.

References setup_sugar_ring_closure_constraints().

void core::scoring::rna::RNA_SugarCloseEnergy::setup_sugar_ring_closure_constraints ( pose::Pose pose) const

The documentation for this class was generated from the following files:
 All Classes Namespaces Files Functions Variables Typedefs Enumerations Enumerator Friends Defines