Rosetta 3.4
Public Types | Public Member Functions | Protected Member Functions
protocols::protein_interface_design::movers::BackrubDDMover Class Reference

#include <BackrubDDMover.hh>

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List of all members.

Public Types

typedef
core::scoring::ScoreFunctionCOP 
ScoreFunctionCOP
typedef
core::scoring::ScoreFunctionOP 
ScoreFunctionOP
typedef core::pose::Pose Pose

Public Member Functions

 BackrubDDMover ()
 BackrubDDMover (ScoreFunctionCOP scorefxn, bool const backrub_partner1, bool const backrub_partner2, core::Real const interface_distance_cutoff, core::Size const backrub_moves, core::Real const mc_kt, core::Real const sidechain_move_prob, std::vector< core::Size > const &residues)
void apply (Pose &pose)
 a dummy apply so that instantiation of this baseclass would be possible.
virtual std::string get_name () const
 Each derived class must specify its name. The class name.
protocols::moves::MoverOP clone () const
 clone has to be overridden only if clone invocation is expected.
protocols::moves::MoverOP fresh_instance () const
 this is like clone(), except it generates a new mover object freshly created with the default ctor. This function _should_ be pure virtual but that would disrupt the code base; MAKE SURE YOU DEFINE IT if you want to have your mover be a protocol handed to the job distributor (august 08 vintage).
virtual ~BackrubDDMover ()

Protected Member Functions

void parse_my_tag (utility::tag::TagPtr const tag, protocols::moves::DataMap &, protocols::filters::Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &)
 Called by MoverFactory when constructing new Movers. Takes care of the specific mover's parsing.

Member Typedef Documentation

Reimplemented from protocols::moves::Mover.


Constructor & Destructor Documentation

protocols::protein_interface_design::movers::BackrubDDMover::BackrubDDMover ( )
protocols::protein_interface_design::movers::BackrubDDMover::BackrubDDMover ( ScoreFunctionCOP  scorefxn,
bool const  backrub_partner1,
bool const  backrub_partner2,
core::Real const  interface_distance_cutoff,
core::Size const  backrub_moves,
core::Real const  mc_kt,
core::Real const  sidechain_move_prob,
std::vector< core::Size > const &  residues 
)
protocols::protein_interface_design::movers::BackrubDDMover::~BackrubDDMover ( ) [virtual]

Member Function Documentation

void protocols::protein_interface_design::movers::BackrubDDMover::apply ( Pose ) [virtual]

a dummy apply so that instantiation of this baseclass would be possible.

Reimplemented from protocols::simple_moves::DesignRepackMover.

References protocols::backrub::BackrubMover::add_mainchain_segments(), protocols::simple_moves::sidechain_moves::SidechainMover::apply(), protocols::simple_moves::BBG8T3AMover::apply(), protocols::simple_moves::BackboneMover::apply(), protocols::backrub::BackrubMover::apply(), protocols::moves::MonteCarlo::boltzmann(), protocols::backrub::BackrubMover::branchopt(), core::conformation::Conformation::chain_begin(), core::conformation::Conformation::chain_end(), protocols::backrub::BackrubMover::clear_segments(), core::pose::Pose::conformation(), protocols::simple_moves::BBG8T3AMover::factorA(), protocols::simple_moves::BBG8T3AMover::factorB(), core::pose::Pose::fold_tree(), core::conformation::Residue::is_protein(), protocols::moves::MonteCarlo::lowest_score_pose(), protocols::simple_moves::BBGaussianMover::movemap(), protocols::simple_moves::BackboneMover::movemap(), protocols::simple_moves::BackboneMover::nmoves(), core::conformation::Conformation::num_chains(), protocols::backrub::BackrubMover::num_segments(), protocols::backrub::BackrubMover::optimize_branch_angles(), core::kinematics::FoldTree::partition_by_jump(), protocols::branch_angle::BranchAngleOptimizer::read_database(), protocols::moves::MonteCarlo::reset(), core::pose::Pose::residue(), protocols::moves::Mover::set_input_pose(), protocols::moves::Mover::set_native_pose(), protocols::simple_moves::sidechain_moves::SidechainMover::set_prob_uniform(), protocols::simple_moves::sidechain_moves::SidechainMover::set_task_factory(), protocols::moves::MonteCarlo::show_counters(), protocols::protein_interface_design::star_fold_tree(), core::kinematics::Edge::start(), core::kinematics::Edge::stop(), core::pose::Pose::total_residue(), protocols::moves::Mover::type(), and protocols::branch_angle::BranchAngleOptimizer::write_database().

Referenced by protocols::enzdes::EnzRepackMinimize::apply().

protocols::moves::MoverOP protocols::protein_interface_design::movers::BackrubDDMover::clone ( ) const [virtual]

clone has to be overridden only if clone invocation is expected.

clone is meant to return an OP'ed deep copy of this object. This really should be a pure virtual in the base class, but adding pure virtuals to Mover would massively disrupt the code. This default implementation crashes at runtime instead of compiletime if you try to call it. If this code is causing you problems, your Mover needs to override this function.

Implements protocols::simple_moves::DesignRepackMover.

protocols::moves::MoverOP protocols::protein_interface_design::movers::BackrubDDMover::fresh_instance ( ) const [inline, virtual]

this is like clone(), except it generates a new mover object freshly created with the default ctor. This function _should_ be pure virtual but that would disrupt the code base; MAKE SURE YOU DEFINE IT if you want to have your mover be a protocol handed to the job distributor (august 08 vintage).

fresh_instance is meant to return a new object of this class, created with the default constructor. This really should be a pure virtual in the base class, but adding pure virtuals to Mover would massively disrupt the code. This default implementation crashes at runtime instead of compiletime if you try to call it. If this code is causing you problems, your Mover needs to override this function. This is used by the August 08 job distributor.

Implements protocols::simple_moves::DesignRepackMover.

std::string protocols::protein_interface_design::movers::BackrubDDMover::get_name ( ) const [virtual]

Each derived class must specify its name. The class name.

Reimplemented from protocols::simple_moves::DesignRepackMover.

References protocols::protein_interface_design::movers::BackrubDDMoverCreator::mover_name().

void protocols::protein_interface_design::movers::BackrubDDMover::parse_my_tag ( utility::tag::TagPtr const  tag,
protocols::moves::DataMap data,
protocols::filters::Filters_map const &  filters,
protocols::moves::Movers_map const &  movers,
core::pose::Pose const &  pose 
) [protected, virtual]

Called by MoverFactory when constructing new Movers. Takes care of the specific mover's parsing.

Some movers need not be parsed, so we shouldn't stop executions. This, however, calls attention to the lack of this method, which could be due to something as silly as a wrong parameters definition.

Reimplemented from protocols::simple_moves::DesignRepackMover.

References make_table_of_pilot_apps::begin, core::scoring::methods::EnergyMethodOptions::bond_angle_central_atoms_to_score(), core::sequence::end, protocols::moves::DataMap::get(), protocols::rosetta_scripts::get_resnum(), core::scoring::mm_bend, protocols::rosetta_scripts::parse_resnum(), protocols::rosetta_scripts::parse_task_operations(), and core::pose::Pose::total_residue().


The documentation for this class was generated from the following files:
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