Rosetta 3.4
core::scoring::electron_density::ElectronDensity Member List
This is the complete list of members for core::scoring::electron_density::ElectronDensity, including all inherited members.
cart2frac(numeric::xyzVector< core::Real > const &cartX, numeric::xyzVector< core::Real > &fracX) const core::scoring::electron_density::ElectronDensity [inline]
cart2idx(numeric::xyzVector< core::Real > const &cartX, numeric::xyzVector< core::Real > &idxX) const core::scoring::electron_density::ElectronDensity [inline]
clear_dCCdx_res_cache(core::pose::Pose const &pose)core::scoring::electron_density::ElectronDensity
clearMask()core::scoring::electron_density::ElectronDensity [inline]
compute_symm_rotations(core::pose::Pose const &pose, const core::conformation::symmetry::SymmetryInfo *symmInfo=NULL)core::scoring::electron_density::ElectronDensity
data() const core::scoring::electron_density::ElectronDensity [inline]
dCCdx_aacen(int atmid, int resid, numeric::xyzVector< core::Real > const &X, core::pose::Pose const &pose, numeric::xyzVector< core::Real > &gradX)core::scoring::electron_density::ElectronDensity
dCCdx_cen(int resid, numeric::xyzVector< core::Real > const &X, core::pose::Pose const &pose, numeric::xyzVector< core::Real > &gradX)core::scoring::electron_density::ElectronDensity
dCCdx_fastRes(int atmid, int resid, numeric::xyzVector< core::Real > const &X, core::conformation::Residue const &rsd, core::pose::Pose const &pose, numeric::xyzVector< core::Real > &gradX)core::scoring::electron_density::ElectronDensity
dCCdx_pat(int atmid, int resid, numeric::xyzVector< core::Real > const &X, core::pose::Pose const &pose, numeric::xyzVector< core::Real > &gradX)core::scoring::electron_density::ElectronDensity
dCCdx_res(int atmid, int resid, numeric::xyzVector< core::Real > const &X, core::conformation::Residue const &rsd, core::pose::Pose const &pose, numeric::xyzVector< core::Real > &gradX)core::scoring::electron_density::ElectronDensity
delt_cart(numeric::xyzVector< core::Real > const &cartX1, numeric::xyzVector< core::Real > const &cartX2)core::scoring::electron_density::ElectronDensity
dens_grad(numeric::xyzVector< core::Real > const &idxX) const core::scoring::electron_density::ElectronDensity
ElectronDensity()core::scoring::electron_density::ElectronDensity
ElectronDensity(utility::vector1< core::pose::PoseOP > poses, core::Real reso, core::Real apix)core::scoring::electron_density::ElectronDensity
ElectronDensity(ObjexxFCL::FArray3D< T > const &map, core::Real apix=1.0, numeric::xyzVector< core::Real > new_origin=numeric::xyzVector< core::Real >(0, 0, 0), bool fftshift=false)core::scoring::electron_density::ElectronDensity [inline]
frac2cart(numeric::xyzVector< core::Real > const &fracX, numeric::xyzVector< core::Real > &cartX) const core::scoring::electron_density::ElectronDensity [inline]
get_cart_unitCell(numeric::xyzVector< core::Real > const &cartX)core::scoring::electron_density::ElectronDensity
get_nearest_UC(numeric::xyzVector< core::Real > const &cartX_in, numeric::xyzVector< core::Real > const &cartX_ref)core::scoring::electron_density::ElectronDensity
get_R(int subunit, numeric::xyzMatrix< core::Real > &R)core::scoring::electron_density::ElectronDensity [inline]
get_symmMap(int vrtid, utility::vector1< int > &X_map, numeric::xyzMatrix< core::Real > &R)core::scoring::electron_density::ElectronDensity [inline]
getCCs(int resid)core::scoring::electron_density::ElectronDensity [inline]
getCoM() const core::scoring::electron_density::ElectronDensity [inline]
getEffOrigin() const core::scoring::electron_density::ElectronDensity [inline]
getMax() const core::scoring::electron_density::ElectronDensity [inline]
getMean() const core::scoring::electron_density::ElectronDensity [inline]
getMin() const core::scoring::electron_density::ElectronDensity [inline]
getNumDerivH() const core::scoring::electron_density::ElectronDensity [inline]
getOrigin() const core::scoring::electron_density::ElectronDensity [inline]
getResolution() const core::scoring::electron_density::ElectronDensity [inline]
getStdev() const core::scoring::electron_density::ElectronDensity [inline]
getsymmOps() const core::scoring::electron_density::ElectronDensity [inline]
getTransform()core::scoring::electron_density::ElectronDensity [inline]
getUseDensityInMinimizer() const core::scoring::electron_density::ElectronDensity [inline]
getUseExactDerivatives() const core::scoring::electron_density::ElectronDensity [inline]
idx2cart(numeric::xyzVector< Q > const &idxX, numeric::xyzVector< core::Real > &cartX) const core::scoring::electron_density::ElectronDensity [inline]
idxoffset2cart(numeric::xyzVector< Q > const &idxX, numeric::xyzVector< core::Real > &cartX) const core::scoring::electron_density::ElectronDensity [inline]
isMapLoaded() const core::scoring::electron_density::ElectronDensity [inline]
maskResidues(int scoring_mask)core::scoring::electron_density::ElectronDensity [inline]
maskResidues(utility::vector1< int > const &scoring_mask)core::scoring::electron_density::ElectronDensity [inline]
matchCentroidPose(core::pose::Pose const &pose, const core::conformation::symmetry::SymmetryInfo *symmInfo=NULL, bool cacheCCs=false)core::scoring::electron_density::ElectronDensity
matchPose(core::pose::Pose const &pose, const core::conformation::symmetry::SymmetryInfo *symmInfo=NULL, bool cacheCCs=false)core::scoring::electron_density::ElectronDensity
matchPoseToPatterson(core::pose::Pose const &pose, bool cacheCCs=false)core::scoring::electron_density::ElectronDensity
matchRes(int resid, core::conformation::Residue const &rsd, core::pose::Pose const &pose, const core::conformation::symmetry::SymmetryInfo *symmInfo=NULL, bool cacheCCs=false)core::scoring::electron_density::ElectronDensity
matchResFast(int resid, core::conformation::Residue const &rsd, core::pose::Pose const &pose, const core::conformation::symmetry::SymmetryInfo *symmInfo=NULL)core::scoring::electron_density::ElectronDensity
readMRCandResize(std::string mapfile, core::Real reso=5.0, core::Real gridSpacing=0.0)core::scoring::electron_density::ElectronDensity
rematchResToPatterson(core::conformation::Residue const &rsd) const core::scoring::electron_density::ElectronDensity
resize(core::Real approxGridSpacing)core::scoring::electron_density::ElectronDensity
rotAlign2DPose(core::pose::Pose const &pose, std::string axis)core::scoring::electron_density::ElectronDensity
set_nres(int nres)core::scoring::electron_density::ElectronDensity [inline]
setUseDensityInMinimizer(bool newVal)core::scoring::electron_density::ElectronDensity [inline]
setUseExactDerivatives(bool newVal)core::scoring::electron_density::ElectronDensity [inline]
showCachedScores(utility::vector1< int > const &reses)core::scoring::electron_density::ElectronDensity
updateCachedDensity(core::conformation::Residue const &rsd)core::scoring::electron_density::ElectronDensity
writeMAT(std::string mapfilestem)core::scoring::electron_density::ElectronDensity
writeMRC(std::string mapfilestem)core::scoring::electron_density::ElectronDensity
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