Rosetta 3.4
Namespaces | Functions
src/protocols/abinitio/IterativeBase.cc File Reference
#include <protocols/abinitio/IterativeBase.hh>
#include <protocols/jd2/archive/ArchiveManager.hh>
#include <protocols/noesy_assign/NoesyModule.hh>
#include <protocols/noesy_assign/NoesyModule.impl.hh>
#include <protocols/topology_broker/TopologyBroker.hh>
#include <protocols/topology_broker/util.hh>
#include <basic/options/keys/broker.OptionKeys.gen.hh>
#include <core/types.hh>
#include <core/pose/Pose.hh>
#include <core/pose/util.hh>
#include <core/scoring/Energies.hh>
#include <core/scoring/ResidualDipolarCoupling.hh>
#include <core/scoring/constraints/ConstraintSet.hh>
#include <core/scoring/constraints/ConstraintIO.hh>
#include <core/scoring/constraints/util.hh>
#include <core/io/silent/SilentStruct.hh>
#include <core/io/silent/SilentFileData.hh>
#include <core/fragment/ConstantLengthFragSet.hh>
#include <core/fragment/FragmentIO.hh>
#include <core/fragment/util.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/sequence/util.hh>
#include <core/sequence/Sequence.hh>
#include <protocols/toolbox/DecoySetEvaluation.hh>
#include <protocols/toolbox/DecoySetEvaluation.impl.hh>
#include <core/scoring/ScoreFunction.fwd.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/ScoreType.hh>
#include <protocols/abinitio/PairingStatistics.hh>
#include <protocols/constraints_additional/ConstraintEvaluator.hh>
#include <protocols/simple_filters/JumpEvaluator.hh>
#include <protocols/simple_filters/RmsdEvaluator.hh>
#include <protocols/simple_filters/ScoreEvaluator.hh>
#include <protocols/evaluation/util.hh>
#include <protocols/loops/util.hh>
#include <protocols/loops/Loop.hh>
#include <protocols/loops/LoopsFileIO.hh>
#include <basic/Tracer.hh>
#include <basic/MemTracer.hh>
#include <protocols/cluster/cluster.hh>
#include <protocols/toolbox/Cluster.hh>
#include <protocols/toolbox/Cluster.impl.hh>
#include <core/fragment/SecondaryStructure.hh>
#include <utility/io/izstream.hh>
#include <utility/io/ozstream.hh>
#include <utility/file/FileName.hh>
#include <utility/file/file_sys_util.hh>
#include <numeric/random/random.hh>
#include <utility/DereferenceIterator.hh>
#include <basic/options/keys/abinitio.OptionKeys.gen.hh>
#include <basic/options/keys/constraints.OptionKeys.gen.hh>
#include <basic/options/keys/jumps.OptionKeys.gen.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/run.OptionKeys.gen.hh>
#include <basic/options/keys/cluster.OptionKeys.gen.hh>
#include <boost/functional/hash.hpp>
#include <cstdlib>
#include <string>
#include <vector>
#include <basic/options/option_macros.hh>
#include <numeric/random/random_permutation.hh>
#include <core/import_pose/import_pose.hh>
#include <core/pose/annotated_sequence.hh>
#include <protocols/noesy_assign/CrossPeakList.impl.hh>
#include <utility/vector0.hh>
#include <utility/vector1.hh>

Namespaces

namespace  protocols
 

The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.


namespace  protocols::abinitio

Functions

static basic::Tracer tr ("protocols.iterative")
static
numeric::random::RandomGenerator 
RG (428342)
std::string const NOESY_CST_FILE_NAME ("noe_auto_assign.cst")
static
numeric::random::RandomGenerator 
protocols::abinitio::RG (42089)
void protocols::abinitio::get_core (toolbox::DecoySetEvaluation &eval, core::Real cutoff, loops::Loops &rigid)

Function Documentation

std::string const NOESY_CST_FILE_NAME ( "noe_auto_assign.cst"  )
static numeric::random::RandomGenerator RG ( 428342  ) [static]
static basic::Tracer tr ( "protocols.iterative"  ) [static]
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