protocols::antibody::GraftMover Class Reference

Grafts a series of CDR onto a framework. More...

#include <GraftMover.hh>

Inheritance diagram for protocols::antibody::GraftMover:

Collaboration diagram for protocols::antibody::GraftMover:

List of all members.

Public Member Functions
	GraftMover ()
	~GraftMover ()
void	enable_graft_l1 (bool setting)
void	enable_graft_l2 (bool setting)
void	enable_graft_l3 (bool setting)
void	enable_graft_h1 (bool setting)
void	enable_graft_h2 (bool setting)
void	enable_graft_h3 (bool setting)
void	set_camelid (bool setting)
void	enable_benchmark_mode (bool setting)
	enable benchmark mode
void	relax_optimized_CDR_grafts (core::pose::Pose &pose_in)
	relax optimized CDR grafted regions
void	set_default ()
virtual void	apply (core::pose::Pose &pose_in)
virtual std::string	get_name () const
	Each derived class must specify its name. The class name.

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Detailed Description

Grafts a series of CDR onto a framework.

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Constructor & Destructor Documentation

protocols::antibody::GraftMover::GraftMover

(

)

References set_default().

protocols::antibody::GraftMover::~GraftMover

(

)

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Member Function Documentation

void protocols::antibody::GraftMover::apply

(

core::pose::Pose &

pose_in

)

[virtual]

Implements protocols::moves::Mover.

References protocols::antibody::Antibody::align_to_native(), protocols::simple_moves::ReturnSidechainMover::apply(), protocols::simple_moves::SwitchResidueTypeSetMover::apply(), protocols::antibody::Antibody::cdrh_, protocols::antibody::Antibody::cdrl_, core::chemical::CENTROID, core::scoring::ScoreFunctionFactory::create_score_function(), core::chemical::FA_STANDARD, protocols::antibody::Antibody::Fv, protocols::moves::Mover::get_native_pose(), relax_optimized_CDR_grafts(), core::pose::Pose::residue(), core::pose::Pose::secstruct(), core::pose::Pose::set_secstruct(), core::pose::Pose::set_xyz(), protocols::antibody::simple_one_loop_fold_tree(), core::scoring::STANDARD_WTS, protocols::medal::to_centroid(), core::pose::Pose::total_residue(), and protocols::TR().

void protocols::antibody::GraftMover::enable_benchmark_mode

(

bool

setting

)

[inline]

enable benchmark mode

void protocols::antibody::GraftMover::enable_graft_h1

(

bool

setting

)

[inline]

void protocols::antibody::GraftMover::enable_graft_h2

(

bool

setting

)

[inline]

void protocols::antibody::GraftMover::enable_graft_h3

(

bool

setting

)

[inline]

void protocols::antibody::GraftMover::enable_graft_l1

(

bool

setting

)

[inline]

void protocols::antibody::GraftMover::enable_graft_l2

(

bool

setting

)

[inline]

void protocols::antibody::GraftMover::enable_graft_l3

(

bool

setting

)

[inline]

std::string protocols::antibody::GraftMover::get_name

(

)

const [virtual]

Each derived class must specify its name. The class name.

Implements protocols::moves::Mover.

void protocols::antibody::GraftMover::relax_optimized_CDR_grafts

(

core::pose::Pose &

pose_in

)

relax optimized CDR grafted regions

References core::pose::Pose::secstruct(), and core::pose::Pose::total_residue().

Referenced by apply().

void protocols::antibody::GraftMover::set_camelid

(

bool

setting

)

[inline]

void protocols::antibody::GraftMover::set_default

(

)

References protocols::TR().

Referenced by GraftMover().

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The documentation for this class was generated from the following files:

• src/protocols/antibody/GraftMover.hh
• src/protocols/antibody/GraftMover.cc