Rosetta 3.4
Classes | Typedefs | Functions
protocols::scoring::methods::pcs2 Namespace Reference

Classes

class  GridSearchIterator
class  GridSearchIteratorCA
class  PcsDataCenter
class  PcsDataCenterManager
class  PcsDataCenterManagerSingleton
class  PcsDataLanthanide
class  PcsEnergy
class  PcsEnergyCreator
class  PcsEnergyParameter
class  PcsEnergyParameterManager
class  PcsGridSearchParameter
class  PcsGridSearchParameterManager
class  PcsInputCenter
 PcsInputCenter contain all the input information for one paramagnetic center. It can contain multiple data set. More...
class  PcsInputCenterManager
class  PcsInputFile
 PcsInputFile contain all the information of a .npc file one per lanthanide. More...
class  PcsInputLine
 PcsInputLine class: hold a line of the input file information (.npc format) One PcsInputLine per line in the input file. More...
class  PcsTensor
class  TensorsOptimizer
class  TensorsOptimizerFix
class  TensorsOptimizerSvd

Typedefs

typedef
utility::pointer::owning_ptr
< GridSearchIterator
GridSearchIteratorOP
typedef
utility::pointer::owning_ptr
< GridSearchIterator const > 
GridSearchIteratorCOP
typedef
utility::pointer::owning_ptr
< PcsDataCenter
PcsDataCenterOP
typedef
utility::pointer::owning_ptr
< PcsDataCenter const > 
PcsDataCenterCOP
typedef
utility::pointer::owning_ptr
< PcsDataCenterManager
PcsDataCenterManagerOP
typedef
utility::pointer::owning_ptr
< PcsEnergy
PcsEnergyOP
typedef
utility::pointer::owning_ptr
< PcsEnergy const > 
PcsEnergyCOP
typedef
utility::pointer::owning_ptr
< PcsInputCenter
PcsInputCenterOP
typedef
utility::pointer::owning_ptr
< PcsInputCenter const > 
PcsInputCenterCOP

Functions

basic::Tracer TR_PcsDataCenter ("protocols.scoring.methods.pcs.PcsDataCenter")
core::Real fill_A_line_fast (utility::vector1< core::Real > &A_line, core::Real const xM, core::Real const yM, core::Real const zM, core::Real const x, core::Real const y, core::Real const z)
void fill_A_line_slow (utility::vector1< core::Real > &A_line, core::Real const xM, core::Real const yM, core::Real const zM, core::Real const x, core::Real const y, core::Real const z)
std::ostream & operator<< (std::ostream &out, const PcsDataCenter &me)
basic::Tracer TR_PcsDataCenterManager ("protocols.scoring.methods.pcs.PcsDataCenterManager")
std::ostream & operator<< (std::ostream &out, const PcsDataCenterManager &m)
basic::Tracer TR_PcsDataCenterManagerSingleton ("protocols.scoring.methods.pcs.PcsDataCenterManagerSingleton")
std::ostream & operator<< (std::ostream &out, const PcsDataCenterManagerSingleton &m)
basic::Tracer TR_PcsDataLanthanide ("protocols.scoring.methods.pcs.PcsDataLanthanide")
bool do_I_skip (PcsInputLine &pcs_i_l, core::Size start, core::Size end)
core::Size reduced_size (utility::vector1< PcsInputLine > const &pcs_i_l_v, core::Size start, core::Size end)
std::ostream & operator<< (std::ostream &out, const PcsDataLanthanide &me)
basic::Tracer TR_PcsEnergy ("protocols.scoring.methods.pcs.PcsEnergy")
basic::Tracer TR_PcsEnergyParameter ("protocols.scoring.methods.pcs.PcsEnergyParameter")
std::ostream & operator<< (std::ostream &out, const PcsEnergyParameter &me)
basic::Tracer TR_PcsEnergyParameterManager ("protocols.scoring.methods.pcs.PcsEnergyParameterManager")
std::ostream & operator<< (std::ostream &out, const PcsEnergyParameterManager &me)
std::ostream & operator<< (std::ostream &out, const PcsGridSearchParameter &me)
void output_error_message (core::Size id)
bool valide_include_only_stage (core::Size start, core::Size end)
basic::Tracer TR_PcsInputCenter ("protocols.scoring.methods.pcs.PcsInputCenter")
std::ostream & operator<< (std::ostream &out, const PcsInputCenter &me)
basic::Tracer TR_PcsInputCenterManager ("protocols.scoring.methods.pcs.PcsInputCenterManager")
std::ostream & operator<< (std::ostream &out, const PcsInputCenterManager &me)
basic::Tracer TR_PcsInputFile ("protocols.scoring.methods.pcs.PcsInputFile")
std::ostream & operator<< (std::ostream &out, const PcsInputFile &me)
basic::Tracer TR_PcsInputLine ("protocols.scoring.methods.pcs.PcsInputLine")
std::ostream & operator<< (std::ostream &out, const PcsInputLine &me)
std::ostream & operator<< (std::ostream &out, const PcsTensor &me)
basic::Tracer TR_TensorsOptimizer ("protocols.scoring.methods.pcs.TensorsOptimizer")
basic::Tracer TR_TensorsOptimizerFix ("protocols.scoring.methods.pcs.TensorsOptimizerFix")
basic::Tracer TR_TensorsOptimizerSvd ("protocols.scoring.methods.pcs.TensorsOptimizerSvd")

Typedef Documentation


Function Documentation

bool protocols::scoring::methods::pcs2::do_I_skip ( PcsInputLine &  pcs_i_l,
core::Size  start,
core::Size  end 
)
core::Real protocols::scoring::methods::pcs2::fill_A_line_fast ( utility::vector1< core::Real > &  A_line,
core::Real const  xM,
core::Real const  yM,
core::Real const  zM,
core::Real const  x,
core::Real const  y,
core::Real const  z 
)
void protocols::scoring::methods::pcs2::fill_A_line_slow ( utility::vector1< core::Real > &  A_line,
core::Real const  xM,
core::Real const  yM,
core::Real const  zM,
core::Real const  x,
core::Real const  y,
core::Real const  z 
)
std::ostream& protocols::scoring::methods::pcs2::operator<< ( std::ostream &  out,
const PcsDataCenterManagerSingleton &  m 
)
std::ostream& protocols::scoring::methods::pcs2::operator<< ( std::ostream &  out,
const PcsTensor &  me 
)
std::ostream& protocols::scoring::methods::pcs2::operator<< ( std::ostream &  out,
const PcsEnergyParameterManager &  me 
)
std::ostream& protocols::scoring::methods::pcs2::operator<< ( std::ostream &  out,
const PcsGridSearchParameter &  me 
)

References protocols::scoring::methods::pcs2::PcsGridSearchParameter::filenames_, protocols::scoring::methods::pcs2::PcsGridSearchParameter::include_only_end_stage1_, protocols::scoring::methods::pcs2::PcsGridSearchParameter::include_only_end_stage2_, protocols::scoring::methods::pcs2::PcsGridSearchParameter::include_only_end_stage3_, protocols::scoring::methods::pcs2::PcsGridSearchParameter::include_only_end_stage4_, protocols::scoring::methods::pcs2::PcsGridSearchParameter::include_only_start_stage1_, protocols::scoring::methods::pcs2::PcsGridSearchParameter::include_only_start_stage2_, protocols::scoring::methods::pcs2::PcsGridSearchParameter::include_only_start_stage3_, protocols::scoring::methods::pcs2::PcsGridSearchParameter::include_only_start_stage4_, protocols::scoring::methods::pcs2::PcsGridSearchParameter::individual_scale_stage1_, protocols::scoring::methods::pcs2::PcsGridSearchParameter::individual_scale_stage2_, protocols::scoring::methods::pcs2::PcsGridSearchParameter::individual_scale_stage3_, protocols::scoring::methods::pcs2::PcsGridSearchParameter::individual_scale_stage4_, protocols::scoring::methods::pcs2::PcsGridSearchParameter::individual_weights_, protocols::scoring::methods::pcs2::PcsGridSearchParameter::n_trial_min_stage1_, protocols::scoring::methods::pcs2::PcsGridSearchParameter::n_trial_min_stage2_, protocols::scoring::methods::pcs2::PcsGridSearchParameter::n_trial_min_stage3_, protocols::scoring::methods::pcs2::PcsGridSearchParameter::n_trial_min_stage4_, protocols::scoring::methods::pcs2::PcsGridSearchParameter::pcs_weight_stage1_, protocols::scoring::methods::pcs2::PcsGridSearchParameter::pcs_weight_stage2_, protocols::scoring::methods::pcs2::PcsGridSearchParameter::pcs_weight_stage3_, and protocols::scoring::methods::pcs2::PcsGridSearchParameter::pcs_weight_stage4_.

std::ostream& protocols::scoring::methods::pcs2::operator<< ( std::ostream &  out,
const PcsDataCenter &  me 
)
std::ostream& protocols::scoring::methods::pcs2::operator<< ( std::ostream &  out,
const PcsInputCenter &  me 
)
std::ostream& protocols::scoring::methods::pcs2::operator<< ( std::ostream &  out,
const PcsDataCenterManager &  m 
)
std::ostream& protocols::scoring::methods::pcs2::operator<< ( std::ostream &  out,
const PcsDataLanthanide &  me 
)
std::ostream& protocols::scoring::methods::pcs2::operator<< ( std::ostream &  out,
const PcsInputCenterManager &  me 
)
std::ostream& protocols::scoring::methods::pcs2::operator<< ( std::ostream &  out,
const PcsInputFile &  me 
)
std::ostream& protocols::scoring::methods::pcs2::operator<< ( std::ostream &  out,
const PcsEnergyParameter &  me 
)
std::ostream& protocols::scoring::methods::pcs2::operator<< ( std::ostream &  out,
const PcsInputLine &  me 
)
void protocols::scoring::methods::pcs2::output_error_message ( core::Size  id)
core::Size protocols::scoring::methods::pcs2::reduced_size ( utility::vector1< PcsInputLine > const &  pcs_i_l_v,
core::Size  start,
core::Size  end 
)
basic::Tracer protocols::scoring::methods::pcs2::TR_PcsDataCenter ( "protocols.scoring.methods.pcs.PcsDataCenter"  )
basic::Tracer protocols::scoring::methods::pcs2::TR_PcsDataCenterManager ( "protocols.scoring.methods.pcs.PcsDataCenterManager"  )
basic::Tracer protocols::scoring::methods::pcs2::TR_PcsDataCenterManagerSingleton ( "protocols.scoring.methods.pcs.PcsDataCenterManagerSingleton"  )
basic::Tracer protocols::scoring::methods::pcs2::TR_PcsDataLanthanide ( "protocols.scoring.methods.pcs.PcsDataLanthanide"  )
basic::Tracer protocols::scoring::methods::pcs2::TR_PcsEnergy ( "protocols.scoring.methods.pcs.PcsEnergy"  )
basic::Tracer protocols::scoring::methods::pcs2::TR_PcsEnergyParameter ( "protocols.scoring.methods.pcs.PcsEnergyParameter"  )
basic::Tracer protocols::scoring::methods::pcs2::TR_PcsEnergyParameterManager ( "protocols.scoring.methods.pcs.PcsEnergyParameterManager"  )
basic::Tracer protocols::scoring::methods::pcs2::TR_PcsInputCenter ( "protocols.scoring.methods.pcs.PcsInputCenter"  )
basic::Tracer protocols::scoring::methods::pcs2::TR_PcsInputCenterManager ( "protocols.scoring.methods.pcs.PcsInputCenterManager"  )
basic::Tracer protocols::scoring::methods::pcs2::TR_PcsInputFile ( "protocols.scoring.methods.pcs.PcsInputFile"  )
basic::Tracer protocols::scoring::methods::pcs2::TR_PcsInputLine ( "protocols.scoring.methods.pcs.PcsInputLine"  )
basic::Tracer protocols::scoring::methods::pcs2::TR_TensorsOptimizer ( "protocols.scoring.methods.pcs.TensorsOptimizer"  )
basic::Tracer protocols::scoring::methods::pcs2::TR_TensorsOptimizerFix ( "protocols.scoring.methods.pcs.TensorsOptimizerFix"  )
basic::Tracer protocols::scoring::methods::pcs2::TR_TensorsOptimizerSvd ( "protocols.scoring.methods.pcs.TensorsOptimizerSvd"  )
bool protocols::scoring::methods::pcs2::valide_include_only_stage ( core::Size  start,
core::Size  end 
)
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