Rosetta 3.4
Public Member Functions
protocols::frag_picker::scores::HydrophobicityProfileSimilarity Class Reference

scores a fragment by its hydrophobicity similarity More...

#include <HydrophobicityProfileSimilarity.hh>

Inheritance diagram for protocols::frag_picker::scores::HydrophobicityProfileSimilarity:
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Collaboration diagram for protocols::frag_picker::scores::HydrophobicityProfileSimilarity:
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List of all members.

Public Member Functions

 HydrophobicityProfileSimilarity (Size priority, Real lowest_acceptable_value, bool use_lowest, std::string &fastaQuerySequence, sequence::SequenceProfileOP query_profile)
 creates a hydrophobicity-based scoring function.
 ~HydrophobicityProfileSimilarity ()
void do_caching (VallChunkOP)
void clean_up ()
bool score (FragmentCandidateOP, FragmentScoreMapOP)
bool cached_score (FragmentCandidateOP, FragmentScoreMapOP)

Detailed Description

scores a fragment by its hydrophobicity similarity


Constructor & Destructor Documentation

protocols::frag_picker::scores::HydrophobicityProfileSimilarity::HydrophobicityProfileSimilarity ( Size  priority,
Real  lowest_acceptable_value,
bool  use_lowest,
std::string &  fastaQuerySequence,
sequence::SequenceProfileOP  query_profile 
) [inline]

creates a hydrophobicity-based scoring function.

protocols::frag_picker::scores::HydrophobicityProfileSimilarity::~HydrophobicityProfileSimilarity ( ) [inline]

Member Function Documentation

bool protocols::frag_picker::scores::HydrophobicityProfileSimilarity::cached_score ( FragmentCandidateOP  fragment,
FragmentScoreMapOP  scores 
) [virtual]
void protocols::frag_picker::scores::HydrophobicityProfileSimilarity::clean_up ( ) [inline, virtual]
void protocols::frag_picker::scores::HydrophobicityProfileSimilarity::do_caching ( VallChunkOP  current_chunk) [virtual]
bool protocols::frag_picker::scores::HydrophobicityProfileSimilarity::score ( FragmentCandidateOP  f,
FragmentScoreMapOP  empty_map 
) [virtual]

The documentation for this class was generated from the following files:
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