Rosetta 3.4
Public Member Functions
protocols::jd2::AtomTreeDiffJobInputter Class Reference

#include <AtomTreeDiffJobInputter.hh>

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List of all members.

Public Member Functions

 AtomTreeDiffJobInputter ()
virtual ~AtomTreeDiffJobInputter ()
virtual void pose_from_job (core::pose::Pose &pose, JobOP job)
 this function is responsible for filling the pose reference with the pose indicated by the job. The Job object (within its InnerJob) contains a PoseCOP. This function needs to either fill the pose reference from the InnerJob or, on first demand of a pose from that InnerJob, instantiate the pose, hand off a COP to the InnerJob, and fill the reference. This implementation uses pose_from_pdb
virtual void fill_jobs (Jobs &jobs)
 this function determines what jobs exist from -in::file::silent and
virtual
JobInputterInputSource::Enum 
input_source () const
 Return the type of input source that the AtomTreeDiffJobInputter is currently using.
core::pose::PoseOPs const & all_ref_poses () const
 Utility function to allow mutatable (!) access to the reference poses of the undelying AtomTreeDiff object. Use with caution.

Detailed Description

This is the simplest implementation of JobInputter, which reads from -s/-l and AtomTree files.


Constructor & Destructor Documentation

protocols::jd2::AtomTreeDiffJobInputter::AtomTreeDiffJobInputter ( )

References protocols::jd2::tr().

protocols::jd2::AtomTreeDiffJobInputter::~AtomTreeDiffJobInputter ( ) [virtual]

Member Function Documentation

utility::vector1< core::pose::PoseOP > const & protocols::jd2::AtomTreeDiffJobInputter::all_ref_poses ( ) const

Utility function to allow mutatable (!) access to the reference poses of the undelying AtomTreeDiff object. Use with caution.

This exists to allow setup on stored reference poses for properties that don't get saved/restored in PDB format, like covalent constraints for enzyme design.

void protocols::jd2::AtomTreeDiffJobInputter::fill_jobs ( Jobs jobs) [virtual]

this function determines what jobs exist from -in::file::silent and

-in::file::tags.

this function determines what jobs exist -in:file:atom_tree_diff

Implements protocols::jd2::JobInputter.

References protocols::jd2::tr().

JobInputterInputSource::Enum protocols::jd2::AtomTreeDiffJobInputter::input_source ( ) const [virtual]

Return the type of input source that the AtomTreeDiffJobInputter is currently using.

Returns:
Always ATOM_TREE_FILE.

Implements protocols::jd2::JobInputter.

References protocols::jd2::JobInputterInputSource::ATOM_TREE_FILE.

void protocols::jd2::AtomTreeDiffJobInputter::pose_from_job ( core::pose::Pose pose,
JobOP  job 
) [virtual]

this function is responsible for filling the pose reference with the pose indicated by the job. The Job object (within its InnerJob) contains a PoseCOP. This function needs to either fill the pose reference from the InnerJob or, on first demand of a pose from that InnerJob, instantiate the pose, hand off a COP to the InnerJob, and fill the reference. This implementation uses pose_from_pdb

This function will first see if the pose already exists in the Job. If not, it will read it into the pose reference, and hand a COP cloned from that pose to the Job. If the pose pre-exists it just copies the COP's pose into it.

Implements protocols::jd2::JobInputter.

References core::pose::Pose::clear(), make_table_of_pilot_apps::name, core::import_pose::pose_from_pdb(), and protocols::jd2::tr().


The documentation for this class was generated from the following files:
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