Rosetta 3.4
Namespaces | Functions | Variables
src/core/io/pdb/pose_io.hh File Reference
#include <core/types.hh>
#include <core/pose/Pose.fwd.hh>
#include <core/conformation/Residue.fwd.hh>
#include <core/id/AtomID_Mask.fwd.hh>
#include <basic/Tracer.fwd.hh>
#include <utility/io/ozstream.fwd.hh>
#include <iosfwd>
#include <utility/vector1.hh>

Namespaces

namespace  core
 

A class for defining atom parameters, known as atom_types.


namespace  core::io
namespace  core::io::pdb

Functions

void core::io::pdb::dump_pdb_residue (conformation::Residue const &rsd, Size &atom_number, std::ostream &out)
 Writes pdb data.
void core::io::pdb::dump_bfactor_pdb (pose::Pose const &pose, id::AtomID_Map< Real > const &bfactor, std::ostream &out, std::string const &tag="1")
 Writes <pose> bfactor data.
void core::io::pdb::dump_pdb (pose::Pose const &pose, std::ostream &out, id::AtomID_Mask const &mask, std::string const &tag="1")
 Writes <pose> data.
void core::io::pdb::dump_pdb (pose::Pose const &pose, std::ostream &out, std::string const &tag="1")
 Writes <pose> data.
void core::io::pdb::dump_pdb (pose::Pose const &pose, std::string const &filename, std::string const &tag="1")
 Writes the <pose> data to <filename>
void core::io::pdb::traced_dump_pdb (basic::Tracer const &tr, pose::Pose const &pose, std::ostream &out, std::string const &tag)
 dump_pdb depending on visibility of tracer
void core::io::pdb::traced_dump_pdb (basic::Tracer const &tr, pose::Pose const &pose, std::string const &filename, std::string const &tag)
 dump_pdb depending on visibility of tracer
void core::io::pdb::extract_scores (pose::Pose const &pose, utility::io::ozstream &out)
 Write <pose> Energies information into an output stream (e.g. the tail of a pdb file)
void core::io::pdb::dump_connect_info (pose::Pose const &pose, std::ostream &out)
 dump_connect_info Figure out CONECT fields for PDB output -- atoms that are bonded in Rosetta but won't look that way to RASMOL or Pymol because of distance -- useful for centroid poses.

Variables

basic::Tracer core::io::pdb::TR_dump_pdb_dummy
 special Tracer instance acting as special param for all traced_dump_pdb functions

Detailed Description

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