protocols::flxbb::DesignTask Class Reference

#include <DesignTask.hh>

Inheritance diagram for protocols::flxbb::DesignTask:

Collaboration diagram for protocols::flxbb::DesignTask:

List of all members.

Public Types
typedef std::string	String
typedef core::Size	Size
typedef core::pose::Pose	Pose
typedef core::scoring::ScoreFunctionOP	ScoreFunctionOP
typedef core::pack::task::PackerTaskOP	PackerTaskOP
typedef core::pack::task::operation::TaskOperationOP	TaskOperationOP
typedef protocols::moves::MoverOP	MoverOP
typedef protocols::flxbb::FilterStructsOP	FilterStructsOP
typedef core::chemical::AA	AA
Public Member Functions
	DesignTask ()
	default constructor
	DesignTask (Size const ncycle, ScoreFunctionOP const sfxn, MoverOP const mover, FilterStructsOP const filter_structs=0, PackerTaskOP const taskf=0, String const &resfile="")
	value constructor
	DesignTask (DesignTask const &rval)
	copy constructor
virtual	~DesignTask ()
	destructor
virtual void	setup (Pose const &, PackerTaskOP const )=0
	setup packer task
Size	ncycle () const
	the number of cycles of fixbb design and mover
ScoreFunctionOP	scorefxn () const
	scorefxn for fixbb design
MoverOP	mover () const
	mover after fixbb design
FilterStructsOP	filter_structs () const
	filter during fixbb design
PackerTaskOP	packertask () const
	packer task for fixbb design
String	resfile () const
	resfile
void	set_ncycle (Size const &ncycle)
	the number of cycles of design and mover
void	set_scorefxn (ScoreFunctionOP const sfxn)
	scorefxn for fixbb design
void	set_mover (MoverOP const value)
	mover after fixbb design
void	set_filter_structs (FilterStructsOP const value)
	filter during fixbb design
void	set_packertask (PackerTaskOP const taskf)
	packer task
void	set_resfile (String const &resfile)
	set resfile
void	add_task_operations (utility::vector1< TaskOperationOP > const top)
	add task operations
void	add_task_operation (TaskOperationOP const top)
	add task operation
void	dump_packertask (std::ostream &os)
	output packertask
Protected Attributes
utility::vector1< TaskOperationOP >	task_operations_
	task operations

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Member Typedef Documentation

typedef core::chemical::AA protocols::flxbb::DesignTask::AA

typedef protocols::flxbb::FilterStructsOP protocols::flxbb::DesignTask::FilterStructsOP

Reimplemented in protocols::flxbb::DesignTask_Normal, and protocols::flxbb::DesignTask_Layer.

typedef protocols::moves::MoverOP protocols::flxbb::DesignTask::MoverOP

typedef core::pack::task::PackerTaskOP protocols::flxbb::DesignTask::PackerTaskOP

Reimplemented in protocols::flxbb::DesignTask_Normal, and protocols::flxbb::DesignTask_Layer.

typedef core::pose::Pose protocols::flxbb::DesignTask::Pose

Reimplemented in protocols::flxbb::DesignTask_Normal, and protocols::flxbb::DesignTask_Layer.

typedef core::scoring::ScoreFunctionOP protocols::flxbb::DesignTask::ScoreFunctionOP

Reimplemented in protocols::flxbb::DesignTask_Normal, and protocols::flxbb::DesignTask_Layer.

typedef core::Size protocols::flxbb::DesignTask::Size

typedef std::string protocols::flxbb::DesignTask::String

typedef core::pack::task::operation::TaskOperationOP protocols::flxbb::DesignTask::TaskOperationOP

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Constructor & Destructor Documentation

protocols::flxbb::DesignTask::DesignTask

(

)

default constructor

References resfile().

protocols::flxbb::DesignTask::DesignTask	(	Size const	ncycle,
		ScoreFunctionOP const	sfxn,
		MoverOP const	mover,
		FilterStructsOP const	filter_structs = 0,
		PackerTaskOP const	taskf = 0,
		String const &	resfile = ""
	)

value constructor

References resfile().

protocols::flxbb::DesignTask::DesignTask

(

DesignTask const &

rval

)

copy constructor

value constructor

protocols::flxbb::DesignTask::~DesignTask

(

)

[virtual]

destructor

---

Member Function Documentation

void protocols::flxbb::DesignTask::add_task_operation

(

TaskOperationOP const

top

)

add task operation

References task_operations_.

Referenced by add_task_operations().

void protocols::flxbb::DesignTask::add_task_operations

(

utility::vector1< TaskOperationOP > const

top

)

add task operations

References add_task_operation().

void protocols::flxbb::DesignTask::dump_packertask

(

std::ostream &

os

)

output packertask

DesignTask::FilterStructsOP protocols::flxbb::DesignTask::filter_structs

(

)

const

filter during fixbb design

DesignTask::MoverOP protocols::flxbb::DesignTask::mover

(

)

const

mover after fixbb design

Size protocols::flxbb::DesignTask::ncycle

(

)

const

the number of cycles of fixbb design and mover

Referenced by set_ncycle().

DesignTask::PackerTaskOP protocols::flxbb::DesignTask::packertask

(

)

const

packer task for fixbb design

DesignTask::String protocols::flxbb::DesignTask::resfile

(

)

const

resfile

Referenced by DesignTask(), set_resfile(), protocols::flxbb::DesignTask_Normal::setup(), and protocols::flxbb::DesignTask_Layer::setup().

DesignTask::ScoreFunctionOP protocols::flxbb::DesignTask::scorefxn

(

)

const

scorefxn for fixbb design

void protocols::flxbb::DesignTask::set_filter_structs

(

FilterStructsOP const

value

)

filter during fixbb design

void protocols::flxbb::DesignTask::set_mover

(

MoverOP const

value

)

mover after fixbb design

void protocols::flxbb::DesignTask::set_ncycle

(

Size const &

ncycle

)

the number of cycles of design and mover

the number of cycles of fixbb design and mover

References ncycle().

void protocols::flxbb::DesignTask::set_packertask

(

PackerTaskOP const

taskf

)

packer task

packer task for fixbb design

Referenced by protocols::flxbb::DesignTask_Normal::setup(), and protocols::flxbb::DesignTask_Layer::setup().

void protocols::flxbb::DesignTask::set_resfile

(

String const &

resfile

)

set resfile

References resfile().

void protocols::flxbb::DesignTask::set_scorefxn

(

ScoreFunctionOP const

sfxn

)

scorefxn for fixbb design

filter during fixbb design

virtual void protocols::flxbb::DesignTask::setup	(	Pose const &	,
		PackerTaskOP	const
	)		[pure virtual]

setup packer task

Implemented in protocols::flxbb::DesignTask_Normal, and protocols::flxbb::DesignTask_Layer.

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Member Data Documentation

utility::vector1< TaskOperationOP > protocols::flxbb::DesignTask::task_operations_ [protected]

task operations

Referenced by add_task_operation(), protocols::flxbb::DesignTask_Normal::setup(), and protocols::flxbb::DesignTask_Layer::setup().

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The documentation for this class was generated from the following files:

• src/protocols/flxbb/DesignTask.hh
• src/protocols/flxbb/DesignTask.cc