Rosetta 3.4
core::scoring::DockingScoreFunction Member List
This is the complete list of members for core::scoring::DockingScoreFunction, including all inherited members.
_add_weights_from_file(std::string const &filename, bool patch=false)core::scoring::ScoreFunction
add_extra_method(ScoreType const &new_type, Real const new_weight, methods::EnergyMethod const &new_method)core::scoring::ScoreFunction
add_extra_method(std::map< ScoreType, Real > const &new_weights, methods::EnergyMethod const &new_method)core::scoring::ScoreFunction
add_weights_from_file(std::string const &filename)core::scoring::ScoreFunction
all_energies_begin() const core::scoring::ScoreFunction
all_energies_end() const core::scoring::ScoreFunction
all_methods() const core::scoring::ScoreFunction
AllMethods typedefcore::scoring::ScoreFunction
AllMethodsIterator typedefcore::scoring::ScoreFunction
any_intrares_energies() const core::scoring::ScoreFunction [inline, protected]
any_lr_residue_pair_energy(pose::Pose const &pose, Size res1, Size res2) const core::scoring::ScoreFunction
apply_patch_from_file(std::string const &filename)core::scoring::ScoreFunction
are_they_neighbors(pose::Pose const &pose, Size const pos1, Size const pos2) const core::scoring::ScoreFunction
bump_check_backbone(conformation::Residue const &rsd1, conformation::Residue const &rsd2, pose::Pose const &pose, EnergyMap &emap) const core::scoring::ScoreFunction
bump_check_full(conformation::Residue const &rsd1, conformation::Residue const &rsd2, pose::Pose const &pose, EnergyMap &emap) const core::scoring::ScoreFunction
CD_1B_Methods typedefcore::scoring::ScoreFunction
cd_1b_types() const core::scoring::ScoreFunction [inline]
cd_2b_begin() const core::scoring::ScoreFunction
cd_2b_end() const core::scoring::ScoreFunction
cd_2b_intrares_begin() const core::scoring::ScoreFunction
cd_2b_intrares_end() const core::scoring::ScoreFunction
CD_2B_Methods typedefcore::scoring::ScoreFunction
cd_2b_types() const core::scoring::ScoreFunction [inline]
CD_LR_2B_MethodIterator typedefcore::scoring::ScoreFunction
CD_LR_2B_Methods typedefcore::scoring::ScoreFunction
cd_lr_2b_methods_begin() const core::scoring::ScoreFunction
cd_lr_2b_methods_end() const core::scoring::ScoreFunction
cd_lr_2b_types() const core::scoring::ScoreFunction [inline]
CI_1B_Methods typedefcore::scoring::ScoreFunction
ci_1b_types() const core::scoring::ScoreFunction [inline]
ci_2b_begin() const core::scoring::ScoreFunction
ci_2b_end() const core::scoring::ScoreFunction
ci_2b_intrares_begin() const core::scoring::ScoreFunction
ci_2b_intrares_end() const core::scoring::ScoreFunction
CI_2B_Methods typedefcore::scoring::ScoreFunction
ci_2b_types() const core::scoring::ScoreFunction [inline]
CI_LR_2B_MethodIterator typedefcore::scoring::ScoreFunction
CI_LR_2B_Methods typedefcore::scoring::ScoreFunction
ci_lr_2b_methods_begin() const core::scoring::ScoreFunction
ci_lr_2b_methods_end() const core::scoring::ScoreFunction
ci_lr_2b_types() const core::scoring::ScoreFunction [inline]
clone() const core::scoring::DockingScoreFunction [virtual]
DockingScoreFunction()core::scoring::DockingScoreFunction
DockingScoreFunction(DockingScoreFunction const &)core::scoring::DockingScoreFunction
DockingScoreFunction(ScoreFunction const &src)core::scoring::DockingScoreFunction
DockingScoreFunction(ScoreFunctionOP src)core::scoring::DockingScoreFunction
DockingScoreFunction(ScoreFunctionCOP src)core::scoring::DockingScoreFunction
energy_method_options() const core::scoring::ScoreFunction [inline]
eval_cd_1b(conformation::Residue const &rsd, pose::Pose const &pose, EnergyMap &emap) const core::scoring::ScoreFunction [virtual]
eval_cd_2b(conformation::Residue const &rsd1, conformation::Residue const &rsd2, pose::Pose const &pose, EnergyMap &emap) const core::scoring::ScoreFunction [virtual]
eval_cd_2b_bb_bb(conformation::Residue const &rsd1, conformation::Residue const &rsd2, pose::Pose const &pose, EnergyMap &emap) const core::scoring::ScoreFunction
eval_cd_2b_bb_sc(conformation::Residue const &rsd1, conformation::Residue const &rsd2, pose::Pose const &pose, EnergyMap &emap) const core::scoring::ScoreFunction
eval_cd_2b_sc_sc(conformation::Residue const &rsd1, conformation::Residue const &rsd2, pose::Pose const &pose, EnergyMap &emap) const core::scoring::ScoreFunction
eval_cd_intrares_energy(conformation::Residue const &rsd, pose::Pose const &pose, EnergyMap &emap) const core::scoring::ScoreFunction [virtual]
eval_ci_1b(conformation::Residue const &rsd, pose::Pose const &pose, EnergyMap &emap) const core::scoring::ScoreFunction
eval_ci_2b(conformation::Residue const &rsd1, conformation::Residue const &rsd2, pose::Pose const &pose, EnergyMap &emap) const core::scoring::ScoreFunction
eval_ci_2b_bb_bb(conformation::Residue const &rsd1, conformation::Residue const &rsd2, pose::Pose const &pose, EnergyMap &emap) const core::scoring::ScoreFunction
eval_ci_2b_bb_sc(conformation::Residue const &rsd1, conformation::Residue const &rsd2, pose::Pose const &pose, EnergyMap &emap) const core::scoring::ScoreFunction
eval_ci_2b_sc_sc(conformation::Residue const &rsd1, conformation::Residue const &rsd2, pose::Pose const &pose, EnergyMap &emap) const core::scoring::ScoreFunction
eval_ci_intrares_energy(conformation::Residue const &rsd, pose::Pose const &pose, EnergyMap &emap) const core::scoring::ScoreFunction
eval_dof_derivative(id::DOF_ID const &dof_id, id::TorsionID const &torsion_id, pose::Pose const &pose) const core::scoring::ScoreFunction
eval_intrares_energy(conformation::Residue const &rsd, pose::Pose const &pose, EnergyMap &emap) const core::scoring::ScoreFunction
eval_long_range_twobody_energies(pose::Pose &pose) const core::scoring::ScoreFunction [virtual]
eval_npd_atom_derivative(id::AtomID const &atom_id, pose::Pose const &pose, kinematics::DomainMap const &domain_map, Vector &F1, Vector &F2) const core::scoring::ScoreFunction [virtual]
eval_onebody_energies(pose::Pose &pose) const core::scoring::ScoreFunction [virtual]
eval_twobody_neighbor_energies(pose::Pose &pose) const core::scoring::ScoreFunction [virtual]
evaluate_rotamer_background_energies(conformation::RotamerSetBase const &set1, conformation::Residue const &residue2, pose::Pose const &pose, utility::vector1< core::PackerEnergy > &energy_vector) const core::scoring::ScoreFunction
evaluate_rotamer_intrares_energies(conformation::RotamerSetBase const &set, pose::Pose const &pose, utility::vector1< core::PackerEnergy > &energies) const core::scoring::ScoreFunction
evaluate_rotamer_intrares_energy_maps(conformation::RotamerSetBase const &set, pose::Pose const &pose, utility::vector1< EnergyMap > &emaps) const core::scoring::ScoreFunction
evaluate_rotamer_pair_energies(conformation::RotamerSetBase const &set1, conformation::RotamerSetBase const &set2, pose::Pose const &pose, ObjexxFCL::FArray2D< core::PackerEnergy > &energy_table) const core::scoring::ScoreFunction
finalize_after_derivatives(pose::Pose &pose) const core::scoring::ScoreFunction [virtual]
get_nonzero_weighted_scoretypes() const core::scoring::ScoreFunction [inline]
get_sub_score(pose::Pose const &pose, utility::vector1< bool > const &residue_mask) const core::scoring::ScoreFunction
get_sub_score(pose::Pose const &pose, utility::vector1< bool > const &residue_mask, EnergyMap &emap) const core::scoring::ScoreFunction
get_sub_score(pose::Pose &pose, utility::vector1< bool > const &residue_mask) const core::scoring::ScoreFunction
get_sub_score(pose::Pose &pose, utility::vector1< bool > const &residue_mask, EnergyMap &emap) const core::scoring::ScoreFunction
get_sub_score_exclude_res(pose::Pose const &pose, utility::vector1< core::Size > const &exclude_list) const core::scoring::ScoreFunction
get_sub_score_exclude_res(pose::Pose const &pose, utility::vector1< core::Size > const &exclude_list, EnergyMap &emap) const core::scoring::ScoreFunction
get_sub_score_exclude_res(pose::Pose &pose, utility::vector1< core::Size > const &exclude_list) const core::scoring::ScoreFunction
get_sub_score_exclude_res(pose::Pose &pose, utility::vector1< core::Size > const &exclude_list, EnergyMap &emap) const core::scoring::ScoreFunction
get_weight(ScoreType const &t) const core::scoring::ScoreFunction
has_nonzero_weight(ScoreType const &t) const core::scoring::ScoreFunction [inline]
has_zero_weight(ScoreType const &t) const core::scoring::ScoreFunction [inline]
indicate_required_context_graphs(utility::vector1< bool > &context_graphs_required) const core::scoring::ScoreFunction
info() const core::scoring::ScoreFunction
initialize_from_file(std::string const &filename)core::scoring::ScoreFunction
long_range_energies_begin() const core::scoring::ScoreFunction
long_range_energies_end() const core::scoring::ScoreFunction
LR_2B_MethodIterator typedefcore::scoring::ScoreFunction
LR_2B_Methods typedefcore::scoring::ScoreFunction
max_atomic_interaction_cutoff() const core::scoring::ScoreFunction
merge(const ScoreFunction scorefxn_to_be_merged)core::scoring::ScoreFunction
operator()(pose::Pose &pose) const core::scoring::DockingScoreFunction [virtual]
operator=(DockingScoreFunction const &)core::scoring::DockingScoreFunction
core::scoring::ScoreFunction::operator=(ScoreFunction const &)core::scoring::ScoreFunction
operator[](ScoreType const &t) const core::scoring::ScoreFunction [inline]
parent typedefcore::scoring::DockingScoreFunction
perturb_weights()core::scoring::ScoreFunction
prepare_rotamers_for_packing(pose::Pose const &pose, conformation::RotamerSetBase &set) const core::scoring::ScoreFunction
reinitialize_minnode_for_residue(MinimizationNode &min_node, conformation::Residue const &rsd, kinematics::MinimizerMapBase const &min_map, pose::Pose &pose) const core::scoring::ScoreFunction
reset()core::scoring::ScoreFunction
reset_energy_methods()core::scoring::ScoreFunction
score(pose::Pose &pose) const core::scoring::ScoreFunction [virtual]
score_types_by_method_type(methods::EnergyMethodType const &t) const core::scoring::ScoreFunction [inline]
ScoreFunction()core::scoring::ScoreFunction
ScoreFunction(ScoreFunction const &)core::scoring::ScoreFunction
serialize_weights() const core::scoring::ScoreFunction
set_energy_method_options(methods::EnergyMethodOptions const &energy_method_options_in)core::scoring::ScoreFunction
set_etable(std::string const &etable_name)core::scoring::ScoreFunction
set_method_weights(ScoreType const &t, utility::vector1< Real > const &wts)core::scoring::ScoreFunction
set_weight(ScoreType const &t, Real const &setting)core::scoring::ScoreFunction
setup_for_derivatives(pose::Pose &pose) const core::scoring::ScoreFunction [virtual]
setup_for_lr2benmeth_minimization_for_respair(conformation::Residue const &res1, conformation::Residue const &res2, methods::LongRangeTwoBodyEnergyCOP lr2benergy, MinimizationGraph &g, kinematics::MinimizerMapBase const &min_map, pose::Pose &p, bool const res_moving_wrt_eachother, bool accumulate_fixed_energies, ResidueNeighborConstIteratorOP rni, EnergyMap &fixed_energies, Real const edge_weight=1.0) const core::scoring::ScoreFunction
setup_for_minimizing(pose::Pose &pose, kinematics::MinimizerMapBase const &min_map) const core::scoring::ScoreFunction [virtual]
setup_for_minimizing_for_node(MinimizationNode &min_node, conformation::Residue const &rsd, kinematics::MinimizerMapBase const &min_map, pose::Pose &pose, bool accumulate_fixed_energies, EnergyMap &fixed_energies) const core::scoring::ScoreFunction [virtual]
setup_for_minimizing_sr2b_enmeths_for_minedge(conformation::Residue const &res1, conformation::Residue const &res2, MinimizationEdge &min_edge, kinematics::MinimizerMapBase const &min_map, pose::Pose &pose, bool const res_moving_wrt_eachother, bool accumulate_fixed_energies, EnergyEdge const *energy_edge, EnergyMap &fixed_energies, Real const edge_weight=1.0) const core::scoring::ScoreFunction
setup_for_packing(pose::Pose &pose, utility::vector1< bool > const &residues_repacking, utility::vector1< bool > const &residues_designing) const core::scoring::ScoreFunction
setup_for_scoring(pose::Pose &pose) const core::scoring::ScoreFunction
show(std::ostream &out) const core::scoring::ScoreFunction
show(std::ostream &out, pose::Pose &pose) const core::scoring::ScoreFunction
show(pose::Pose &pose) const core::scoring::ScoreFunction [inline]
show_line(std::ostream &out, pose::Pose const &pose) const core::scoring::ScoreFunction
show_line_headers(std::ostream &out) const core::scoring::ScoreFunction
show_pretty(std::ostream &out) const core::scoring::ScoreFunction
TWO_B_MethodIterator typedefcore::scoring::ScoreFunction
TWO_B_Methods typedefcore::scoring::ScoreFunction
update_residue_for_packing(pose::Pose &pose, Size resid) const core::scoring::ScoreFunction
weights() const core::scoring::ScoreFunction [inline]
whole_structure_types() const core::scoring::ScoreFunction [inline]
WS_MethodIterator typedefcore::scoring::ScoreFunction
WS_Methods typedefcore::scoring::ScoreFunction
ws_methods_begin() const core::scoring::ScoreFunction
ws_methods_end() const core::scoring::ScoreFunction
~ScoreFunction()core::scoring::ScoreFunction
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