protocols::frag_picker::scores::Phi Class Reference

scores a fragment by its predicted phi similarity More...

#include <Phi.hh>

Inheritance diagram for protocols::frag_picker::scores::Phi:

Collaboration diagram for protocols::frag_picker::scores::Phi:

List of all members.

Public Member Functions
	Phi (Size priority, Real lowest_acceptable_value, bool use_lowest, std::string &fastaQuerySequence, utility::vector1< core::Real > &query_phi_prediction, utility::vector1< core::Real > &query_phi_prediction_conf)
	creates a predicted phi-based scoring function.
	~Phi ()
void	do_caching (VallChunkOP)
void	clean_up ()
bool	score (FragmentCandidateOP, FragmentScoreMapOP)
bool	cached_score (FragmentCandidateOP, FragmentScoreMapOP)

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Detailed Description

scores a fragment by its predicted phi similarity

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Constructor & Destructor Documentation

protocols::frag_picker::scores::Phi::Phi	(	Size	priority,
		Real	lowest_acceptable_value,
		bool	use_lowest,
		std::string &	fastaQuerySequence,
		utility::vector1< core::Real > &	query_phi_prediction,
		utility::vector1< core::Real > &	query_phi_prediction_conf
	)		[inline]

creates a predicted phi-based scoring function.

protocols::frag_picker::scores::Phi::~Phi

(

)

[inline]

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Member Function Documentation

bool protocols::frag_picker::scores::Phi::cached_score	(	FragmentCandidateOP	fragment,
		FragmentScoreMapOP	scores
	)		[virtual]

Reimplemented from protocols::frag_picker::scores::CachingScoringMethod.

References score().

void protocols::frag_picker::scores::Phi::clean_up

(

)

[inline, virtual]

Implements protocols::frag_picker::scores::CachingScoringMethod.

void protocols::frag_picker::scores::Phi::do_caching

(

VallChunkOP

current_chunk

)

[virtual]

Implements protocols::frag_picker::scores::CachingScoringMethod.

bool protocols::frag_picker::scores::Phi::score	(	FragmentCandidateOP	f,
		FragmentScoreMapOP	empty_map
	)		[virtual]

Reimplemented from protocols::frag_picker::scores::CachingScoringMethod.

References protocols::frag_picker::scores::FragmentScoringMethod::id_, protocols::frag_picker::scores::FragmentScoringMethod::lowest_acceptable_value_, and protocols::frag_picker::scores::FragmentScoringMethod::use_lowest_.

Referenced by cached_score().

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The documentation for this class was generated from the following files:

• src/protocols/frag_picker/scores/Phi.hh
• src/protocols/frag_picker/scores/Phi.cc