Rosetta 3.4
Public Member Functions
protocols::jd2::SilentFileJobInputter Class Reference

#include <SilentFileJobInputter.hh>

Inheritance diagram for protocols::jd2::SilentFileJobInputter:
Inheritance graph
[legend]
Collaboration diagram for protocols::jd2::SilentFileJobInputter:
Collaboration graph
[legend]

List of all members.

Public Member Functions

 SilentFileJobInputter ()
virtual ~SilentFileJobInputter ()
virtual void pose_from_job (core::pose::Pose &pose, JobOP job)
 this function is responsible for filling the pose reference with the pose indicated by the job. The Job object (within its InnerJob) contains a PoseCOP. This function needs to either fill the pose reference from the InnerJob or, on first demand of a pose from that InnerJob, instantiate the pose, hand off a COP to the InnerJob, and fill the reference. This implementation uses pose_from_pdb
virtual
core::io::silent::SilentStruct
const & 
struct_from_job (JobOP job)
 this function returns the SilentStruct that belongs to the given job
virtual void fill_jobs (Jobs &jobs)
 this function determines what jobs exist from -in::file::silent and
virtual
JobInputterInputSource::Enum 
input_source () const
 Return the type of input source that the SilentFileJobInputter is currently using.
core::io::silent::SilentFileData
const & 
silent_file_data () const

Detailed Description

This is the simplest implementation of JobInputter, which reads from -s/-l and SilentFile files.


Constructor & Destructor Documentation

protocols::jd2::SilentFileJobInputter::SilentFileJobInputter ( )

References protocols::jd2::tr().

protocols::jd2::SilentFileJobInputter::~SilentFileJobInputter ( ) [virtual]

Member Function Documentation

void protocols::jd2::SilentFileJobInputter::fill_jobs ( Jobs jobs) [virtual]

this function determines what jobs exist from -in::file::silent and

-in::file::tags.

this function determines what jobs exist from -in::file::silent and -in::file::tags

Implements protocols::jd2::JobInputter.

References core::sequence::end, and protocols::jd2::tr().

JobInputterInputSource::Enum protocols::jd2::SilentFileJobInputter::input_source ( ) const [virtual]

Return the type of input source that the SilentFileJobInputter is currently using.

Returns:
Always SILENT_FILE.

Implements protocols::jd2::JobInputter.

References protocols::jd2::JobInputterInputSource::SILENT_FILE.

void protocols::jd2::SilentFileJobInputter::pose_from_job ( core::pose::Pose pose,
JobOP  job 
) [virtual]

this function is responsible for filling the pose reference with the pose indicated by the job. The Job object (within its InnerJob) contains a PoseCOP. This function needs to either fill the pose reference from the InnerJob or, on first demand of a pose from that InnerJob, instantiate the pose, hand off a COP to the InnerJob, and fill the reference. This implementation uses pose_from_pdb

This function will first see if the pose already exists in the Job. If not, it will read it into the pose reference, and hand a COP cloned from that pose to the Job. If the pose pre-exists it just copies the COP's pose into it.

Implements protocols::jd2::JobInputter.

References core::pose::Pose::clear(), core::pose::symmetry::is_symmetric(), core::pose::symmetry::make_asymmetric_pose(), core::pose::tag_into_pose(), and protocols::jd2::tr().

core::io::silent::SilentFileData const& protocols::jd2::SilentFileJobInputter::silent_file_data ( ) const [inline]
core::io::silent::SilentStruct const & protocols::jd2::SilentFileJobInputter::struct_from_job ( JobOP  job) [virtual]

this function returns the SilentStruct that belongs to the given job


The documentation for this class was generated from the following files:
 All Classes Namespaces Files Functions Variables Typedefs Enumerations Enumerator Friends Defines