Rosetta 3.4
protocols::flexpack::interaction_graph::OTFFlexbbNode Member List
This is the complete list of members for protocols::flexpack::interaction_graph::OTFFlexbbNode, including all inherited members.
add_edge(EdgeBase *edge_ptr)core::pack::interaction_graph::NodeBase
add_to_one_body_energies(ObjexxFCL::FArray1< PackerEnergy > &energies)protocols::flexpack::interaction_graph::FlexbbNode [virtual]
core::pack::interaction_graph::NodeBase::add_to_one_body_energies(ObjexxFCL::FArray1< core::PackerEnergy > &energy1b)=0core::pack::interaction_graph::NodeBase [pure virtual]
add_to_one_body_energy(int state, PackerEnergy energy)protocols::flexpack::interaction_graph::FlexbbNode [virtual]
alt_bb() const protocols::flexpack::interaction_graph::FlexbbNode [inline]
alternate_state() const protocols::flexpack::interaction_graph::FlexbbNode [inline]
alternate_state_info() const protocols::flexpack::interaction_graph::FlexbbNode [inline]
alternate_state_is_being_considered() const protocols::flexpack::interaction_graph::FlexbbNode [inline]
alternate_state_one_body_energy() const protocols::flexpack::interaction_graph::FlexbbNode [inline]
alternate_state_total_energy() const protocols::flexpack::interaction_graph::FlexbbNode [inline]
alternate_state_two_body_energies() const protocols::flexpack::interaction_graph::FlexbbNode [inline]
alternate_state_two_body_energies(int ind) const protocols::flexpack::interaction_graph::FlexbbNode [inline]
assign_zero_state()=0core::pack::interaction_graph::NodeBase [pure virtual]
bounding_radius_for_rotamers(int aatype, int bb) const protocols::flexpack::interaction_graph::OTFFlexbbNode
closest_state_on_alt_bb() const protocols::flexpack::interaction_graph::FlexbbNode [inline]
copy_alternate_to_current()protocols::flexpack::interaction_graph::FlexbbNode [protected]
count_dynamic_memory() const protocols::flexpack::interaction_graph::OTFFlexbbNode [virtual]
count_energy_to_node_in_my_fragtotalE(int edge_index) const protocols::flexpack::interaction_graph::FlexbbNode [inline]
count_static_memory() const =0core::pack::interaction_graph::NodeBase [pure virtual]
curr_bb() const protocols::flexpack::interaction_graph::FlexbbNode [inline]
curr_state_one_body_energy() const protocols::flexpack::interaction_graph::FlexbbNode [inline]
curr_state_total_energy() const protocols::flexpack::interaction_graph::FlexbbNode [inline]
curr_state_two_body_energies()protocols::flexpack::interaction_graph::FlexbbNode [inline]
current_state() const protocols::flexpack::interaction_graph::FlexbbNode [inline]
current_state_info() const protocols::flexpack::interaction_graph::FlexbbNode [inline]
declare_all_rotamers_initialized()protocols::flexpack::interaction_graph::OTFFlexbbNode
depth_first_connected_component_counting()core::pack::interaction_graph::NodeBase
DistanceSquared typedefprotocols::flexpack::interaction_graph::OTFFlexbbNode
drop_all_edges()core::pack::interaction_graph::NodeBase
drop_edge(std::list< EdgeBase * >::iterator edge_iterator)core::pack::interaction_graph::NodeBase
edge_connects_flexsegmate() const protocols::flexpack::interaction_graph::FlexbbNode [inline]
edge_list_begin()core::pack::interaction_graph::NodeBase
edge_list_end()core::pack::interaction_graph::NodeBase
find_edge(int other_node_index) const core::pack::interaction_graph::NodeBase
FlexbbNode(FlexbbInteractionGraph *owner, int node_id, int num_states)protocols::flexpack::interaction_graph::FlexbbNode
get_adjacent_flexbb_node(int index) const protocols::flexpack::interaction_graph::FlexbbNode [inline, protected]
get_adjacent_flexbb_node(int index)protocols::flexpack::interaction_graph::FlexbbNode [inline, protected]
get_adjacent_node(int index) const core::pack::interaction_graph::NodeBase [inline, protected]
get_adjacent_node(int index)core::pack::interaction_graph::NodeBase [inline, protected]
get_adjacent_otfflexbb_node(int index) const protocols::flexpack::interaction_graph::OTFFlexbbNode [inline, protected]
get_adjacent_otfflexbb_node(int index)protocols::flexpack::interaction_graph::OTFFlexbbNode [inline, protected]
get_all_states(utility::vector1< Size > &rotlist, int offset) const protocols::flexpack::interaction_graph::FlexbbNode
get_backbone_for_current_state() const protocols::flexpack::interaction_graph::FlexbbNode
get_bb_for_state(int state) const protocols::flexpack::interaction_graph::FlexbbNode [inline]
get_current_state() const protocols::flexpack::interaction_graph::FlexbbNode
get_edge_vector_up_to_date() const core::pack::interaction_graph::NodeBase [inline, protected]
get_flexbbig_owner() const protocols::flexpack::interaction_graph::FlexbbNode [inline, protected]
get_flexbbig_owner()protocols::flexpack::interaction_graph::FlexbbNode [inline, protected]
get_incident_edge(int index) const core::pack::interaction_graph::NodeBase [inline, protected]
get_incident_edge(int index)core::pack::interaction_graph::NodeBase [inline, protected]
get_incident_flexbb_edge(int index) const protocols::flexpack::interaction_graph::FlexbbNode [inline, protected]
get_incident_flexbb_edge(int index)protocols::flexpack::interaction_graph::FlexbbNode [inline, protected]
get_incident_otfflexbb_edge(int index) const protocols::flexpack::interaction_graph::OTFFlexbbNode [inline, protected]
get_incident_otfflexbb_edge(int index)protocols::flexpack::interaction_graph::OTFFlexbbNode [inline, protected]
get_index_of_adjacent_node(int index) const core::pack::interaction_graph::NodeBase [inline, protected]
get_node_index() const core::pack::interaction_graph::NodeBase [inline, protected]
get_num_distinct_backbones() const protocols::flexpack::interaction_graph::FlexbbNode [inline]
get_num_edges_to_larger_indexed_nodes() const core::pack::interaction_graph::NodeBase [inline, protected]
get_num_edges_to_smaller_indexed_nodes() const core::pack::interaction_graph::NodeBase [inline, protected]
get_num_incident_edges() const core::pack::interaction_graph::NodeBase [inline, protected]
get_num_states() const core::pack::interaction_graph::NodeBase
get_num_states_for_aa_type_for_bb(int aa_type, int bb) const protocols::flexpack::interaction_graph::FlexbbNode
get_num_states_for_bb(int bbconf) const protocols::flexpack::interaction_graph::FlexbbNode
get_one_body_energy(int state) const protocols::flexpack::interaction_graph::FlexbbNode
get_otfflexbbig_owner() const protocols::flexpack::interaction_graph::OTFFlexbbNode [inline, protected]
get_otfflexbbig_owner()protocols::flexpack::interaction_graph::OTFFlexbbNode [inline, protected]
get_owner() const core::pack::interaction_graph::NodeBase [inline, protected]
get_owner()core::pack::interaction_graph::NodeBase [inline, protected]
get_state_offset_for_bb(int bbconf) const protocols::flexpack::interaction_graph::FlexbbNode
get_states_on_curr_bb(utility::vector1< Size > &state_list, int offset) const protocols::flexpack::interaction_graph::FlexbbNode
getNumStatesPerAAPerBB(int aa)protocols::flexpack::interaction_graph::FlexbbNode
have_edges_copy_alternate_to_current()protocols::flexpack::interaction_graph::FlexbbNode [protected]
have_edges_copy_alternate_to_current_following_flexbb_accept()protocols::flexpack::interaction_graph::FlexbbNode [protected]
inc_alternate_state_total_energy(PackerEnergy setting)protocols::flexpack::interaction_graph::FlexbbNode [inline, protected]
inc_curr_state_total_energy(PackerEnergy setting)protocols::flexpack::interaction_graph::FlexbbNode [inline, protected]
inform_edges_considered_fixedbb_substition_uncommitted()protocols::flexpack::interaction_graph::FlexbbNode [protected]
inform_edges_of_alt_state_before_bbjump()protocols::flexpack::interaction_graph::FlexbbNode
inform_incident_edges_about_partial_state_assignment()protocols::flexpack::interaction_graph::FlexbbNode [protected]
NodeBase(InteractionGraphBase *, int node_id, int num_states)core::pack::interaction_graph::NodeBase
num_aa_types() const protocols::flexpack::interaction_graph::FlexbbNode [inline]
num_bbconfs() const protocols::flexpack::interaction_graph::FlexbbNode [inline]
num_states_for_aa_for_bb()protocols::flexpack::interaction_graph::FlexbbNode [inline]
num_states_for_bb()protocols::flexpack::interaction_graph::FlexbbNode [inline]
one_body_energies() const protocols::flexpack::interaction_graph::FlexbbNode [inline]
OTFFlexbbNode(OTFFlexbbInteractionGraph *, int node_id, int num_states)protocols::flexpack::interaction_graph::OTFFlexbbNode
PackerEnergy typedefprotocols::flexpack::interaction_graph::OTFFlexbbNode
parent typedefprotocols::flexpack::interaction_graph::OTFFlexbbNode
partial_state_assignment(int new_state)protocols::flexpack::interaction_graph::FlexbbNode [protected]
prepare_for_simulated_annealing()protocols::flexpack::interaction_graph::FlexbbNode [virtual]
print() const protocols::flexpack::interaction_graph::OTFFlexbbNode [virtual]
print_internal_energies()protocols::flexpack::interaction_graph::FlexbbNode
Real typedefprotocols::flexpack::interaction_graph::OTFFlexbbNode
reset_all_rotamer_substitution_bookkeeping_data()protocols::flexpack::interaction_graph::FlexbbNode [protected]
Residue typedefprotocols::flexpack::interaction_graph::OTFFlexbbNode
ResidueCOP typedefprotocols::flexpack::interaction_graph::OTFFlexbbNode
rotamer(int index) const protocols::flexpack::interaction_graph::OTFFlexbbNode [inline]
rotamer_is_glycine(int state) const protocols::flexpack::interaction_graph::OTFFlexbbNode [inline]
rotamer_is_proline(int state) const protocols::flexpack::interaction_graph::OTFFlexbbNode [inline]
set_alternate_state(int setting)protocols::flexpack::interaction_graph::FlexbbNode [inline, protected]
set_alternate_state_one_body_energy(PackerEnergy setting)protocols::flexpack::interaction_graph::FlexbbNode [inline, protected]
set_alternate_state_total_energy(PackerEnergy setting)protocols::flexpack::interaction_graph::FlexbbNode [inline, protected]
set_alternate_state_two_body_energies(Size index, PackerEnergy setting)protocols::flexpack::interaction_graph::FlexbbNode [inline, protected]
set_amino_acid_types(utility::vector1< int > const &)protocols::flexpack::interaction_graph::FlexbbNode
set_closest_states_on_other_bbs(ObjexxFCL::FArray2D_int const &)protocols::flexpack::interaction_graph::FlexbbNode
set_considering_alternate_state()protocols::flexpack::interaction_graph::FlexbbNode [inline, protected]
set_curr_state_one_body_energy(PackerEnergy setting)protocols::flexpack::interaction_graph::FlexbbNode [inline, protected]
set_curr_state_total_energy(PackerEnergy setting)protocols::flexpack::interaction_graph::FlexbbNode [inline, protected]
set_curr_state_two_body_energies(Size index, PackerEnergy setting)protocols::flexpack::interaction_graph::FlexbbNode [inline, protected]
set_current_state(int setting)protocols::flexpack::interaction_graph::FlexbbNode [inline, protected]
set_num_distinct_backbones(int nbbconfs)protocols::flexpack::interaction_graph::FlexbbNode
set_num_states_per_backbone(utility::vector1< int > const &)protocols::flexpack::interaction_graph::FlexbbNode
set_rotamer(int state, ResidueCOP rotamer)protocols::flexpack::interaction_graph::OTFFlexbbNode
Size typedefprotocols::flexpack::interaction_graph::OTFFlexbbNode
state_has_same_backbone_as_current(int state) const protocols::flexpack::interaction_graph::FlexbbNode [inline]
state_info(int state) const protocols::flexpack::interaction_graph::FlexbbNode [inline]
state_offsets_for_aa_for_bb()protocols::flexpack::interaction_graph::FlexbbNode [inline]
state_offsets_for_bb()protocols::flexpack::interaction_graph::FlexbbNode [inline]
state_unassigned() const protocols::flexpack::interaction_graph::FlexbbNode [virtual]
update_edge_vector()core::pack::interaction_graph::NodeBase [protected]
update_internal_energy_sums()protocols::flexpack::interaction_graph::FlexbbNode
update_internal_vectors()protocols::flexpack::interaction_graph::FlexbbNode [protected]
update_one_body_energy(int state, PackerEnergy energy)protocols::flexpack::interaction_graph::FlexbbNode [virtual]
Vector typedefprotocols::flexpack::interaction_graph::OTFFlexbbNode
write_current_state_to_state_array(ObjexxFCL::FArray1_int &nodes_states)protocols::flexpack::interaction_graph::FlexbbNode
zero_one_body_energies()protocols::flexpack::interaction_graph::FlexbbNode [virtual]
~FlexbbNode()protocols::flexpack::interaction_graph::FlexbbNode [virtual]
~NodeBase()core::pack::interaction_graph::NodeBase [virtual]
~OTFFlexbbNode()protocols::flexpack::interaction_graph::OTFFlexbbNode [virtual]
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