Rosetta 3.4
Public Member Functions | Public Attributes
core::scoring::sym_e::symEnergy Class Reference

#include <symE.hh>

Inheritance diagram for core::scoring::sym_e::symEnergy:
Inheritance graph
[legend]
Collaboration diagram for core::scoring::sym_e::symEnergy:
Collaboration graph
[legend]

List of all members.

Public Member Functions

 symEnergy ()
virtual methods::EnergyMethodOP clone () const
virtual void setup_for_scoring (pose::Pose &pose, ScoreFunction const &) const
virtual void setup_for_packing (pose::Pose &pose, utility::vector1< bool > const &, utility::vector1< bool > const &) const
virtual void indicate_required_context_graphs (utility::vector1< bool > &context_graphs_required) const
 Indicate in the context-graphs-required list which context-graphs this energy method requires that the Pose maintain when doing neighbor evaluation. Context graphs are allowed.
virtual bool defines_intrares_energy (EnergyMap const &weights) const
 Two body energies are able to define intra-residue energies, and to do so only in the presence of certain non-zero weights. The ScoreFunction will hand over its weight set as it asks whether the energy method defines an intraresidue energy or not.
virtual void eval_intrares_energy (conformation::Residue const &rsd, pose::Pose const &pose, ScoreFunction const &sfxn, EnergyMap &emap) const
 Evaluate the intra-residue energy for a given residue.
virtual
methods::LongRangeEnergyType 
long_range_type () const
virtual bool defines_residue_pair_energy (const core::pose::Pose &pose, platform::Size res1, platform::Size res2) const
virtual void residue_pair_energy (conformation::Residue const &rsd1, conformation::Residue const &rsd2, pose::Pose const &pose, ScoreFunction const &, EnergyMap &emap) const
 Evaluate the interaction between a given residue pair accumulating the unweighted energies in an EnergyMap.
virtual core::Size version () const
 Return the version of the energy method.

Public Attributes

 __pad0__:ContextDependentLRTwoBodyEnergy parent

Constructor & Destructor Documentation

core::scoring::sym_e::symEnergy::symEnergy ( )

Referenced by clone().


Member Function Documentation

methods::EnergyMethodOP core::scoring::sym_e::symEnergy::clone ( ) const [virtual]
bool core::scoring::sym_e::symEnergy::defines_intrares_energy ( EnergyMap const &  weights) const [virtual]

Two body energies are able to define intra-residue energies, and to do so only in the presence of certain non-zero weights. The ScoreFunction will hand over its weight set as it asks whether the energy method defines an intraresidue energy or not.

For example, the Etable method defines intra-residue energies only when one or more of the fa_intra_{atr,rep,sol} weights are non-zero.

Implements core::scoring::methods::TwoBodyEnergy.

bool core::scoring::sym_e::symEnergy::defines_residue_pair_energy ( const core::pose::Pose pose,
platform::Size  res1,
platform::Size  res2 
) const [virtual]
void core::scoring::sym_e::symEnergy::eval_intrares_energy ( conformation::Residue const &  rsd,
pose::Pose const &  pose,
ScoreFunction const &  sfxn,
EnergyMap emap 
) const [virtual]

Evaluate the intra-residue energy for a given residue.

Implements core::scoring::methods::TwoBodyEnergy.

void core::scoring::sym_e::symEnergy::indicate_required_context_graphs ( utility::vector1< bool > &  context_graphs_required) const [virtual]

Indicate in the context-graphs-required list which context-graphs this energy method requires that the Pose maintain when doing neighbor evaluation. Context graphs are allowed.

Implements core::scoring::methods::EnergyMethod.

methods::LongRangeEnergyType core::scoring::sym_e::symEnergy::long_range_type ( ) const [virtual]
void core::scoring::sym_e::symEnergy::residue_pair_energy ( conformation::Residue const &  rsd1,
conformation::Residue const &  rsd2,
pose::Pose const &  pose,
ScoreFunction const &  sfxn,
EnergyMap emap 
) const [virtual]

Evaluate the interaction between a given residue pair accumulating the unweighted energies in an EnergyMap.

Implements core::scoring::methods::TwoBodyEnergy.

References core::conformation::Residue::name(), core::conformation::Residue::seqpos(), core::scoring::symE_bonus, and core::pose::Pose::total_residue().

void core::scoring::sym_e::symEnergy::setup_for_packing ( pose::Pose ,
utility::vector1< bool > const &  ,
utility::vector1< bool > const &   
) const [virtual]

default implementation noop

Reimplemented from core::scoring::methods::EnergyMethod.

References core::pose::Pose::update_residue_neighbors().

void core::scoring::sym_e::symEnergy::setup_for_scoring ( pose::Pose pose,
ScoreFunction const &   
) const [virtual]
core::Size core::scoring::sym_e::symEnergy::version ( ) const [virtual]

Return the version of the energy method.

Implements core::scoring::methods::EnergyMethod.


Member Data Documentation


The documentation for this class was generated from the following files:
 All Classes Namespaces Files Functions Variables Typedefs Enumerations Enumerator Friends Defines