Rosetta 3.4
Public Member Functions
protocols::frag_picker::scores::RamaScore Class Reference

RamaScore score counts identical residues. More...

#include <RamaScore.hh>

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List of all members.

Public Member Functions

 RamaScore (Size, Real, bool, std::string &, std::string)
 RamaScore (Size, Real, bool, std::string &, core::fragment::SecondaryStructureOP, std::string)
void SetupRamaTables ()
void do_caching (VallChunkOP)
void clean_up ()
bool score (FragmentCandidateOP f, FragmentScoreMapOP empty_map)
bool cached_score (FragmentCandidateOP f, FragmentScoreMapOP empty_map)
bool describe_score (FragmentCandidateOP f, FragmentScoreMapOP empty_map, std::ostream &out)
 prints a detailed explanation how a fragment score has been computed
std::string & get_prediction_name ()

Detailed Description

RamaScore score counts identical residues.

Detailed: Resulting score is the number of identical residues
on corresponding positions in a vall fragment and a query sequence

Constructor & Destructor Documentation

protocols::frag_picker::scores::RamaScore::RamaScore ( Size  priority,
Real  lowest_acceptable_value,
bool  use_lowest,
std::string &  fastaQuery,
std::string  prediction_name 
)

References SetupRamaTables().

protocols::frag_picker::scores::RamaScore::RamaScore ( Size  priority,
Real  lowest_acceptable_value,
bool  use_lowest,
std::string &  fastaQuery,
core::fragment::SecondaryStructureOP  query_prediction,
std::string  prediction_name 
)

References SetupRamaTables().


Member Function Documentation

bool protocols::frag_picker::scores::RamaScore::cached_score ( FragmentCandidateOP  f,
FragmentScoreMapOP  empty_map 
) [virtual]
void protocols::frag_picker::scores::RamaScore::clean_up ( ) [virtual]
bool protocols::frag_picker::scores::RamaScore::describe_score ( FragmentCandidateOP  f,
FragmentScoreMapOP  empty_map,
std::ostream &  out 
)

prints a detailed explanation how a fragment score has been computed

Detailed: besides extensive output, the method should return the same result as score()
void protocols::frag_picker::scores::RamaScore::do_caching ( VallChunkOP  current_chunk) [virtual]
std::string& protocols::frag_picker::scores::RamaScore::get_prediction_name ( ) [inline]
bool protocols::frag_picker::scores::RamaScore::score ( FragmentCandidateOP  f,
FragmentScoreMapOP  empty_map 
) [virtual]
void protocols::frag_picker::scores::RamaScore::SetupRamaTables ( )

The documentation for this class was generated from the following files:
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