Rosetta 3.4
Public Member Functions | Public Attributes
protocols::antibody::Antibody Class Reference

antibody definition More...

#include <AntibodyClass.hh>

Collaboration diagram for protocols::antibody::Antibody:
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List of all members.

Public Member Functions

 Antibody ()
 default constructor
 Antibody (core::pose::Pose &pose_in)
 constructor with arguments
 Antibody (core::pose::Pose &pose_in, bool camelid)
 constructor with arguments
 Antibody (core::pose::Pose &pose_in, std::string cdr_name)
 constructor with arguments
void set_defaults ()
void set_Fv (core::pose::Pose &pose_in)
void set_Fv (core::pose::Pose &pose_in, bool camelid)
void populate_all_cdrs ()
void all_cdr_fold_tree ()
void align_to_native (antibody::Antibody &native)
 align current Fv to native.Fv

Public Attributes

core::Size cdrl_ [4][3]
core::Size cdrh_ [4][3]
core::Size lfr_ [8][3]
core::Size hfr_ [7][3]
core::Size current_start
core::Size current_end
core::pose::Pose Fv
bool kinked_
bool extended_
utility::vector1< char > Fv_sequence_
loops::Loops all_cdr_loops
core::kinematics::MoveMap ab_movemap

Detailed Description

antibody definition


Constructor & Destructor Documentation

protocols::antibody::Antibody::Antibody ( )

default constructor

References cdrh_, cdrl_, current_end, current_start, extended_, hfr_, kinked_, and lfr_.

protocols::antibody::Antibody::Antibody ( core::pose::Pose pose_in)

constructor with arguments

References current_end, current_start, extended_, Fv, kinked_, and set_defaults().

protocols::antibody::Antibody::Antibody ( core::pose::Pose pose_in,
bool  camelid 
)

constructor with arguments

References current_end, current_start, extended_, Fv, kinked_, and set_defaults().

protocols::antibody::Antibody::Antibody ( core::pose::Pose pose_in,
std::string  cdr_name 
)

constructor with arguments

References cdrh_, cdrl_, current_end, current_start, Fv, and core::pose::Pose::pdb_info().


Member Function Documentation

void protocols::antibody::Antibody::align_to_native ( antibody::Antibody native)
void protocols::antibody::Antibody::all_cdr_fold_tree ( )
void protocols::antibody::Antibody::populate_all_cdrs ( )
void protocols::antibody::Antibody::set_defaults ( )
void protocols::antibody::Antibody::set_Fv ( core::pose::Pose pose_in,
bool  camelid 
)
void protocols::antibody::Antibody::set_Fv ( core::pose::Pose pose_in)

Member Data Documentation

Referenced by Antibody(), and set_defaults().


The documentation for this class was generated from the following files:
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