Rosetta 3.4
protocols::constraints_additional::MaxSeqSepConstraintSet Member List
This is the complete list of members for protocols::constraints_additional::MaxSeqSepConstraintSet, including all inherited members.
add_constraint(ConstraintCOP cst)core::scoring::constraints::ConstraintSet
add_constraints(ConstraintCOPs cst_list)core::scoring::constraints::ConstraintSet
add_dof_constraint(DOF_ID const &id, FuncOP func, ScoreType const &t=dof_constraint)core::scoring::constraints::ConstraintSet
AtomID typedefcore::scoring::constraints::ConstraintSet
attach_to_conformation(core::conformation::Conformation *conformation)core::scoring::constraints::ConstraintSet
clear()core::scoring::constraints::ConstraintSet
clone() const protocols::constraints_additional::MaxSeqSepConstraintSet [inline, virtual]
ConstraintSet()core::scoring::constraints::ConstraintSet
ConstraintSet(ConstraintSet const &other)core::scoring::constraints::ConstraintSet
ConstraintSet(ConstraintSet const &other, core::Size start_residue, core::Size end_residue)core::scoring::constraints::ConstraintSet
deprecated_eval_atom_derivative(id::AtomID const &atom_id, pose::Pose const &pose, ScoreFunction const &, EnergyMap const &weights, Vector &F1, Vector &F2) const core::scoring::constraints::ConstraintSet [virtual]
deprecated_eval_atom_derivative_for_residue_pairs(id::AtomID const &atom_id, pose::Pose const &pose, ScoreFunction const &, EnergyMap const &weights, Vector &F1, Vector &F2) const core::scoring::constraints::ConstraintSet [protected, virtual]
detach_from_conformation()core::scoring::constraints::ConstraintSet
DOF_ID typedefcore::scoring::constraints::ConstraintSet
eval_intrares_energy(conformation::Residue const &rsd, pose::Pose const &pose, ScoreFunction const &sfxn, EnergyMap &emap) const core::scoring::constraints::ConstraintSet [virtual]
eval_intrares_energy(conformation::Residue const &rsd, EnergyMap &emap) const core::scoring::constraints::ConstraintSet
eval_multibody_atom_derivative(id::AtomID const &atom_id, pose::Pose const &pose, ScoreFunction const &, EnergyMap const &weights, Vector &F1, Vector &F2) const core::scoring::constraints::ConstraintSet [virtual]
eval_non_residue_pair_energy(core::pose::Pose const &pose, core::scoring::ScoreFunction const &sfxn, core::scoring::EnergyMap &emap) const protocols::constraints_additional::MaxSeqSepConstraintSet [virtual]
get_all_constraints() const core::scoring::constraints::ConstraintSet
has_constraints() const core::scoring::constraints::ConstraintSet [inline]
has_dof_constraints() const core::scoring::constraints::ConstraintSet [inline]
has_intra_residue_constraints() const core::scoring::constraints::ConstraintSet [inline]
has_non_residue_pair_constraints() const core::scoring::constraints::ConstraintSet [inline]
has_residue_pair_constraints() const core::scoring::constraints::ConstraintSet [inline]
is_empty() const core::scoring::constraints::ConstraintSet
largest_possible_sequence_sep(core::pose::Pose const &pose) const protocols::constraints_additional::MaxSeqSepConstraintSet
mark_revision_id_expired()core::scoring::constraints::ConstraintSet [protected]
max_seq_sep() const protocols::constraints_additional::MaxSeqSepConstraintSet [inline]
MaxSeqSepConstraintSet(ConstraintSet const &other, core::kinematics::FoldTree const &f)protocols::constraints_additional::MaxSeqSepConstraintSet
MaxSeqSepConstraintSet(MaxSeqSepConstraintSet const &other)protocols::constraints_additional::MaxSeqSepConstraintSet
MaxSeqSepConstraintSet(ConstraintSet const &other, core::kinematics::ShortestPathInFoldTreeOP sp)protocols::constraints_additional::MaxSeqSepConstraintSet [protected]
non_residue_pair_constraints() const core::scoring::constraints::ConstraintSet [inline, protected]
on_connection_change(core::conformation::signals::ConnectionEvent const &event)core::scoring::constraints::ConstraintSet
on_length_change(conformation::signals::LengthEvent const &event)core::scoring::constraints::ConstraintSet
Pose typedefcore::scoring::constraints::ConstraintSet
remap_residue_positions(id::SequenceMapping const &smap)core::scoring::constraints::ConstraintSet
remapped_clone(core::pose::Pose const &src, core::pose::Pose const &dest, core::id::SequenceMappingCOP smap=NULL) const protocols::constraints_additional::MaxSeqSepConstraintSet [virtual]
remove_constraint(ConstraintCOP cst, bool object_comparison)core::scoring::constraints::ConstraintSet
remove_constraints(ConstraintCOPs cst_list, bool object_comparison)core::scoring::constraints::ConstraintSet
Residue typedefcore::scoring::constraints::ConstraintSet
residue_pair_constraint_exists(int const pos1, int const pos2) const protocols::constraints_additional::MaxSeqSepConstraintSet [inline, virtual]
residue_pair_constraints() const core::scoring::constraints::ConstraintSet [protected]
residue_pair_constraints_begin(Size resid) const core::scoring::constraints::ConstraintSet
residue_pair_constraints_end(Size resid) const core::scoring::constraints::ConstraintSet
residue_pair_constraints_exists(Size const pos) const core::scoring::constraints::ConstraintSet [inline, virtual]
residue_pair_energy(Residue const &rsd1, Residue const &rsd2, Pose const &pose, core::scoring::ScoreFunction const &scorefxn, core::scoring::EnergyMap &emap) const protocols::constraints_additional::MaxSeqSepConstraintSet [virtual]
ResiduePairConstraints typedefcore::scoring::constraints::ConstraintSet
ResiduePairConstraintsIterator typedefcore::scoring::constraints::ConstraintSet
revision_id() const core::scoring::constraints::ConstraintSet
set_max_seq_sep(Size setting)protocols::constraints_additional::MaxSeqSepConstraintSet [inline]
setup_for_derivatives(pose::Pose &pose, ScoreFunction const &scfxn) const core::scoring::constraints::ConstraintSet [virtual]
setup_for_minimizing_for_residue(conformation::Residue const &rsd, pose::Pose const &pose, ScoreFunction const &sfxn, kinematics::MinimizerMapBase const &minmap, ResSingleMinimizationData &res_data_cache) const core::scoring::constraints::ConstraintSet [virtual]
setup_for_minimizing_for_residue_pair(core::conformation::Residue const &rsd1, core::conformation::Residue const &rsd2, core::pose::Pose const &pose, core::scoring::ScoreFunction const &sfxn, core::kinematics::MinimizerMapBase const &minmap, core::scoring::ResSingleMinimizationData const &res1_data_cache, core::scoring::ResSingleMinimizationData const &res2_data_cache, core::scoring::ResPairMinimizationData &respair_data_cache) const protocols::constraints_additional::MaxSeqSepConstraintSet [virtual]
setup_for_scoring(pose::Pose &pose, ScoreFunction const &scfxn) const core::scoring::constraints::ConstraintSet [virtual]
shortest_path() const protocols::constraints_additional::MaxSeqSepConstraintSet [inline]
show(std::ostream &out) const core::scoring::constraints::ConstraintSet [virtual]
show_definition(std::ostream &out, core::pose::Pose const &) const core::scoring::constraints::ConstraintSet [virtual]
show_numbers(std::ostream &out) const core::scoring::constraints::ConstraintSet [virtual]
show_violations(std::ostream &out, core::pose::Pose &, Size verbose_level, core::Real threshold=1)protocols::constraints_additional::MaxSeqSepConstraintSet
core::scoring::constraints::ConstraintSet::show_violations(std::ostream &out, pose::Pose &, Size verbose_level, Real threshold=1) const core::scoring::constraints::ConstraintSet [virtual]
steal_def_clone(pose::Pose const &src, pose::Pose const &dest, id::SequenceMappingCOP smap=NULL) const core::scoring::constraints::ConstraintSet [virtual]
too_far(int const pos1, int const pos2) const protocols::constraints_additional::MaxSeqSepConstraintSet
~ConstraintSet()core::scoring::constraints::ConstraintSet [inline]
~MaxSeqSepConstraintSet()protocols::constraints_additional::MaxSeqSepConstraintSet
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