Rosetta 3.4
protocols::abinitio::FragmentSampler Member List
This is the complete list of members for protocols::abinitio::FragmentSampler, including all inherited members.
apply(core::pose::Pose &pose)protocols::abinitio::FragmentSampler [virtual]
bQuickTest() const protocols::abinitio::FragmentSampler [inline]
clear_info()protocols::moves::Mover [inline, virtual]
clone() const protocols::abinitio::FragmentSampler [virtual]
current_scorefxn() const protocols::abinitio::FragmentSampler
current_scorefxn(core::scoring::ScoreFunction const &scorefxn)protocols::abinitio::FragmentSampler [protected]
do_stage1_cycles(core::pose::Pose &pose)protocols::abinitio::FragmentSampler [protected, virtual]
do_stage2_cycles(core::pose::Pose &pose)protocols::abinitio::FragmentSampler [protected, virtual]
do_stage3_cycles(core::pose::Pose &pose)protocols::abinitio::FragmentSampler [protected, virtual]
do_stage4_cycles(core::pose::Pose &pose)protocols::abinitio::FragmentSampler [protected, virtual]
Filters_map typedefprotocols::moves::Mover
FragmentSampler(topology_broker::TopologyBrokerOP broker)protocols::abinitio::FragmentSampler
fresh_instance() const protocols::moves::Mover [virtual]
get_additional_output()protocols::moves::Mover [virtual]
get_checkpoints()protocols::abinitio::FragmentSampler [inline, virtual]
get_current_job() const protocols::moves::Mover
get_current_tag() const protocols::moves::Mover [inline]
get_input_pose() const protocols::moves::Mover
get_last_move_status() const protocols::moves::Mover
get_name() const protocols::abinitio::FragmentSampler [virtual]
get_native_pose() const protocols::moves::Mover
get_type() const protocols::moves::Mover [inline]
info()protocols::moves::Mover [inline, virtual]
info() const protocols::moves::Mover [inline, virtual]
just_smooth_cycles() const protocols::abinitio::FragmentSampler [inline]
last_proposal_density_ratio()protocols::moves::Mover [inline, virtual]
mc()protocols::abinitio::FragmentSampler [inline, protected]
mc() const protocols::abinitio::FragmentSampler [inline, protected]
mc_ptr()protocols::abinitio::FragmentSampler [inline, protected]
Mover()protocols::moves::Mover
Mover(std::string const &type_name)protocols::moves::Mover
Mover(Mover const &other)protocols::moves::Mover
mover(core::pose::Pose const &pose, StageID stage_id, core::scoring::ScoreFunction const &scorefxn, core::Real progress=1.0)protocols::abinitio::FragmentSampler [protected, virtual]
operator=(Mover const &other)protocols::moves::Mover
parse_my_tag(TagPtr const tag, DataMap &data, Filters_map const &filters, Movers_map const &movers, Pose const &pose)protocols::moves::Mover [virtual]
Pose typedefprotocols::moves::Mover
PoseCOP typedefprotocols::moves::Mover
prepare_loop_in_stage3(core::pose::Pose &, Size, Size)protocols::abinitio::FragmentSampler [protected, virtual]
prepare_loop_in_stage4(core::pose::Pose &, Size, Size)protocols::abinitio::FragmentSampler [protected, virtual]
prepare_stage1(core::pose::Pose &pose)protocols::abinitio::FragmentSampler [protected, virtual]
prepare_stage2(core::pose::Pose &pose)protocols::abinitio::FragmentSampler [protected, virtual]
prepare_stage3(core::pose::Pose &pose)protocols::abinitio::FragmentSampler [protected, virtual]
prepare_stage4(core::pose::Pose &pose)protocols::abinitio::FragmentSampler [protected, virtual]
recover_low(core::pose::Pose &pose, StageID stage)protocols::abinitio::FragmentSampler [protected]
register_options()protocols::abinitio::FragmentSampler [static]
reinitialize_for_each_job() const protocols::moves::Mover [virtual]
reinitialize_for_new_input() const protocols::moves::Mover [virtual]
replace_scorefxn(core::pose::Pose &pose, StageID stage, core::Real intra_stage_progress)protocols::abinitio::FragmentSampler [protected, virtual]
reset_status()protocols::moves::Mover
set_current_job(protocols::jobdist::BasicJobCOP job)protocols::moves::Mover
set_current_tag(std::string const &new_tag)protocols::moves::Mover [inline]
set_current_weight(core::scoring::ScoreType type, core::Real setting)protocols::abinitio::FragmentSampler [protected]
set_cycles(core::Real increase_cycles=1.0)protocols::abinitio::FragmentSampler [virtual]
set_defaults()protocols::abinitio::FragmentSampler [protected]
set_input_pose(PoseCOP pose)protocols::moves::Mover [virtual]
set_last_move_status(MoverStatus status)protocols::moves::Mover [protected]
set_mc(moves::MonteCarloOP)protocols::abinitio::FragmentSampler [protected]
set_native_pose(PoseCOP pose)protocols::moves::Mover [virtual]
set_score_weight(core::scoring::ScoreType, core::Real setting, StageID stage=ALL_STAGES)protocols::abinitio::FragmentSampler [virtual]
set_stage4_cycles(core::Size stage4_cycles_new)protocols::abinitio::FragmentSampler [inline]
stage1_cycles() const protocols::abinitio::FragmentSampler [inline]
stage1_cycles_protocols::abinitio::FragmentSampler [protected]
stage2_cycles() const protocols::abinitio::FragmentSampler [inline]
stage2_cycles_protocols::abinitio::FragmentSampler [protected]
stage3_cycles() const protocols::abinitio::FragmentSampler [inline]
stage3_cycles_protocols::abinitio::FragmentSampler [protected]
stage4_cycles() const protocols::abinitio::FragmentSampler [inline]
stage4_cycles_protocols::abinitio::FragmentSampler [protected]
Strings typedefprotocols::moves::Mover
TagPtr typedefprotocols::moves::Mover
test_move(Pose &pose)protocols::moves::Mover [inline, virtual]
topology_broker(topology_broker::TopologyBrokerOP set)protocols::abinitio::FragmentSampler
topology_broker()protocols::abinitio::FragmentSampler [protected]
type() const protocols::moves::Mover [inline]
type(const std::string &type_in)protocols::moves::Mover [inline]
~FragmentSampler()protocols::abinitio::FragmentSampler [virtual]
~Mover()protocols::moves::Mover [virtual]
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