protocols::frag_picker::scores::TorsionBinSimilarity Class Reference

scores a fragment by torsion bin similarity More...

#include <TorsionBinSimilarity.hh>

Inheritance diagram for protocols::frag_picker::scores::TorsionBinSimilarity:

Collaboration diagram for protocols::frag_picker::scores::TorsionBinSimilarity:

List of all members.

Public Member Functions
	TorsionBinSimilarity (Size priority, Real lowest_acceptable_value, bool use_lowest, utility::vector1< utility::vector1< core::Real > > query_bin_probs, Size sequence_length, Size longest_vall_chunk)
void	do_caching (VallChunkOP)
void	clean_up ()
virtual bool	cached_score (FragmentCandidateOP, FragmentScoreMapOP)
	Computes the score.
Protected Attributes
Matrix	scores_

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Detailed Description

scores a fragment by torsion bin similarity

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Constructor & Destructor Documentation

protocols::frag_picker::scores::TorsionBinSimilarity::TorsionBinSimilarity	(	Size	priority,
		Real	lowest_acceptable_value,
		bool	use_lowest,
		utility::vector1< utility::vector1< core::Real > >	query_bin_probs,
		Size	sequence_length,
		Size	longest_vall_chunk
	)		[inline]

References scores_.

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Member Function Documentation

bool protocols::frag_picker::scores::TorsionBinSimilarity::cached_score	(	FragmentCandidateOP	f,
		FragmentScoreMapOP	empty_map
	)		[virtual]

Computes the score.

Reimplemented from protocols::frag_picker::scores::CachingScoringMethod.

References do_caching(), protocols::frag_picker::scores::FragmentScoringMethod::id_, protocols::frag_picker::scores::FragmentScoringMethod::lowest_acceptable_value_, scores_, core::scoring::total_score, and protocols::frag_picker::scores::FragmentScoringMethod::use_lowest_.

void protocols::frag_picker::scores::TorsionBinSimilarity::clean_up

(

)

[inline, virtual]

Implements protocols::frag_picker::scores::CachingScoringMethod.

void protocols::frag_picker::scores::TorsionBinSimilarity::do_caching

(

VallChunkOP

chunk

)

[virtual]

Implements protocols::frag_picker::scores::CachingScoringMethod.

References core::scoring::omega, protocols::swa::phi(), protocols::swa::psi(), scores_, and protocols::frag_picker::scores::tr().

Referenced by cached_score().

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Member Data Documentation

Matrix protocols::frag_picker::scores::TorsionBinSimilarity::scores_ [protected]

Referenced by cached_score(), do_caching(), and TorsionBinSimilarity().

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The documentation for this class was generated from the following files:

• src/protocols/frag_picker/scores/TorsionBinSimilarity.hh
• src/protocols/frag_picker/scores/TorsionBinSimilarity.cc