Rosetta 3.4
protocols::relax::ClassicRelax Member List
This is the complete list of members for protocols::relax::ClassicRelax, including all inherited members.
apply(core::pose::Pose &pose)protocols::relax::ClassicRelax [virtual]
apply_disulfides(core::pose::Pose &pose)protocols::relax::RelaxProtocolBase
cartesian(bool newval)protocols::relax::RelaxProtocolBase [inline]
cartesian() const protocols::relax::RelaxProtocolBase [inline]
cartesian_protocols::relax::RelaxProtocolBase [protected]
ClassicRelax(core::scoring::ScoreFunctionOP scorefxn_in)protocols::relax::ClassicRelax
ClassicRelax(core::scoring::ScoreFunctionOP scorefxn_in, core::kinematics::MoveMapOP movemap)protocols::relax::ClassicRelax
ClassicRelax(ClassicRelax const &)protocols::relax::ClassicRelax
ClassicRelax()protocols::relax::ClassicRelax
clear_info()protocols::moves::Mover [inline, virtual]
clone() const protocols::relax::ClassicRelax [virtual]
constrain_coords() const protocols::relax::RelaxProtocolBase [inline]
constrain_coords(bool constrain_coords)protocols::relax::RelaxProtocolBase [inline]
constrain_coords_protocols::relax::RelaxProtocolBase [protected]
constrain_relax_segments() const protocols::relax::RelaxProtocolBase [inline]
constrain_relax_segments(bool constrain_relax_segments)protocols::relax::RelaxProtocolBase [inline]
constrain_relax_segments_protocols::relax::RelaxProtocolBase [protected]
constrain_relax_to_native_coords() const protocols::relax::RelaxProtocolBase [inline]
constrain_relax_to_native_coords(bool constrain_relax_to_native_coords)protocols::relax::RelaxProtocolBase [inline]
constrain_relax_to_native_coords_protocols::relax::RelaxProtocolBase [protected]
constrain_relax_to_start_coords() const protocols::relax::RelaxProtocolBase [inline]
constrain_relax_to_start_coords(bool constrain_relax_to_start_coords)protocols::relax::RelaxProtocolBase [inline]
constrain_relax_to_start_coords_protocols::relax::RelaxProtocolBase [protected]
coord_constrain_sidechains_protocols::relax::RelaxProtocolBase [protected]
dry_run() const protocols::relax::RelaxProtocolBase [inline]
explicit_ramp_constraints() const protocols::relax::RelaxProtocolBase [inline]
explicit_ramp_constraints_protocols::relax::RelaxProtocolBase [protected]
Filters_map typedefprotocols::moves::Mover
fresh_instance() const protocols::relax::RelaxProtocolBase [inline, virtual]
get_additional_output()protocols::moves::Mover [virtual]
get_checkpoints()protocols::relax::ClassicRelax [inline]
get_current_job() const protocols::moves::Mover
get_current_tag() const protocols::moves::Mover [inline]
get_input_pose() const protocols::moves::Mover
get_last_move_status() const protocols::moves::Mover
get_mc(core::pose::Pose &pose)protocols::relax::ClassicRelax
get_movemap()protocols::relax::RelaxProtocolBase
get_name() const protocols::relax::ClassicRelax [virtual]
get_native_pose() const protocols::moves::Mover
get_scorefxn() const protocols::relax::RelaxProtocolBase
get_scorefxn()protocols::relax::RelaxProtocolBase [protected]
get_task_factory() const protocols::relax::RelaxProtocolBase
get_type() const protocols::moves::Mover [inline]
info()protocols::moves::Mover [inline, virtual]
info() const protocols::moves::Mover [inline, virtual]
initialize_movemap(core::pose::Pose const &pose, core::kinematics::MoveMap &movemap)protocols::relax::RelaxProtocolBase [protected]
last_proposal_density_ratio()protocols::moves::Mover [inline, virtual]
limit_aroma_chi2() const protocols::relax::RelaxProtocolBase [inline]
limit_aroma_chi2_protocols::relax::RelaxProtocolBase [protected]
min_type_protocols::relax::RelaxProtocolBase [protected]
minimize_bond_angles(bool setting)protocols::relax::RelaxProtocolBase
minimize_bond_angles() const protocols::relax::RelaxProtocolBase
minimize_bond_lengths(bool setting)protocols::relax::RelaxProtocolBase
minimize_bond_lengths() const protocols::relax::RelaxProtocolBase
minimize_mainchain_bond_angles(bool setting)protocols::relax::RelaxProtocolBase
minimize_mainchain_bond_angles() const protocols::relax::RelaxProtocolBase
minimize_mainchain_bond_lengths(bool setting)protocols::relax::RelaxProtocolBase
minimize_mainchain_bond_lengths() const protocols::relax::RelaxProtocolBase
Mover()protocols::moves::Mover
Mover(std::string const &type_name)protocols::moves::Mover
Mover(Mover const &other)protocols::moves::Mover
operator=(Mover const &other)protocols::moves::Mover
output_debug_structure(core::pose::Pose &pose, std::string prefix)protocols::relax::RelaxProtocolBase [protected]
parent typedefprotocols::relax::ClassicRelax
parse_my_tag(TagPtr const tag, DataMap &data, Filters_map const &filters, Movers_map const &movers, Pose const &pose)protocols::moves::Mover [virtual]
Pose typedefprotocols::moves::Mover
PoseCOP typedefprotocols::moves::Mover
ramp_down_constraints() const protocols::relax::RelaxProtocolBase [inline]
ramp_down_constraints(bool ramp_down_constraints)protocols::relax::RelaxProtocolBase [inline]
ramp_down_constraints_protocols::relax::RelaxProtocolBase [protected]
register_options()protocols::relax::ClassicRelax [static]
reinitialize_for_each_job() const protocols::moves::Mover [virtual]
reinitialize_for_new_input() const protocols::moves::Mover [virtual]
RelaxProtocolBase(core::scoring::ScoreFunctionOP)protocols::relax::RelaxProtocolBase
RelaxProtocolBase(std::string const &movername="RelaxProtocol")protocols::relax::RelaxProtocolBase
RelaxProtocolBase(std::string const &movername, core::scoring::ScoreFunctionOP)protocols::relax::RelaxProtocolBase
reset_status()protocols::moves::Mover
set_current_job(protocols::jobdist::BasicJobCOP job)protocols::moves::Mover
set_current_tag(std::string const &new_tag)protocols::moves::Mover [inline]
set_default(core::scoring::ScoreFunctionOP scorefxn_in)protocols::relax::ClassicRelax
set_default(bool const use_default_movemap=true)protocols::relax::ClassicRelax
set_default_coordinate_settings()protocols::relax::RelaxProtocolBase
set_default_minimization_settings()protocols::relax::RelaxProtocolBase
set_default_minimizer()protocols::relax::ClassicRelax
set_default_movemap()protocols::relax::RelaxProtocolBase
set_default_moveset_phase1()protocols::relax::ClassicRelax
set_default_moveset_phase2()protocols::relax::ClassicRelax
set_default_moveset_phase3()protocols::relax::ClassicRelax
set_defaults()protocols::relax::RelaxProtocolBase
set_dry_run(bool setting)protocols::relax::RelaxProtocolBase [inline]
set_full_repack(protocols::simple_moves::PackRotamersMoverOP new_pack_full_repack)protocols::relax::ClassicRelax
set_input_pose(PoseCOP pose)protocols::moves::Mover [virtual]
set_last_move_status(MoverStatus status)protocols::moves::Mover [protected]
set_lj_ramp_cycles(int param)protocols::relax::ClassicRelax [inline]
set_lj_ramp_inner_cycles(int param)protocols::relax::ClassicRelax [inline]
set_mc(moves::MonteCarloOP new_mc_)protocols::relax::ClassicRelax
set_min_type(std::string min_type)protocols::relax::RelaxProtocolBase
set_movemap(core::kinematics::MoveMapOP movemap)protocols::relax::RelaxProtocolBase
set_native_pose(PoseCOP pose)protocols::moves::Mover [virtual]
set_rottrial(protocols::simple_moves::RotamerTrialsMoverOP new_pack_rottrial)protocols::relax::ClassicRelax
set_scorefxn(core::scoring::ScoreFunctionOP score)protocols::relax::RelaxProtocolBase
set_stage2_cycles(int cycles2)protocols::relax::ClassicRelax [inline]
set_stage2_repack_period(int repack2)protocols::relax::ClassicRelax [inline]
set_stage3_cycles(int cycles3)protocols::relax::ClassicRelax [inline]
set_start_rep_weight(core::Real param)protocols::relax::ClassicRelax [inline]
set_task_factory(core::pack::task::TaskFactoryOP taskf)protocols::relax::RelaxProtocolBase
set_tolerance(core::Real new_tolerance)protocols::relax::ClassicRelax
set_up_constraints(core::pose::Pose &pose, core::kinematics::MoveMap &local_movemap)protocols::relax::RelaxProtocolBase [protected]
setPoseExtraScores(core::pose::Pose &pose)protocols::relax::ClassicRelax
Strings typedefprotocols::moves::Mover
TagPtr typedefprotocols::moves::Mover
test_move(Pose &pose)protocols::moves::Mover [inline, virtual]
type() const protocols::moves::Mover [inline]
type(const std::string &type_in)protocols::moves::Mover [inline]
use_coarse_vdw()protocols::relax::ClassicRelax [inline]
~ClassicRelax()protocols::relax::ClassicRelax [virtual]
~Mover()protocols::moves::Mover [virtual]
~RelaxProtocolBase()protocols::relax::RelaxProtocolBase
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