protocols::relax::ClassicRelax Member List

This is the complete list of members for protocols::relax::ClassicRelax, including all inherited members.

apply(core::pose::Pose &pose)	protocols::relax::ClassicRelax	[virtual]
apply_disulfides(core::pose::Pose &pose)	protocols::relax::RelaxProtocolBase
cartesian(bool newval)	protocols::relax::RelaxProtocolBase	[inline]
cartesian() const	protocols::relax::RelaxProtocolBase	[inline]
cartesian_	protocols::relax::RelaxProtocolBase	[protected]
ClassicRelax(core::scoring::ScoreFunctionOP scorefxn_in)	protocols::relax::ClassicRelax
ClassicRelax(core::scoring::ScoreFunctionOP scorefxn_in, core::kinematics::MoveMapOP movemap)	protocols::relax::ClassicRelax
ClassicRelax(ClassicRelax const &)	protocols::relax::ClassicRelax
ClassicRelax()	protocols::relax::ClassicRelax
clear_info()	protocols::moves::Mover	[inline, virtual]
clone() const	protocols::relax::ClassicRelax	[virtual]
constrain_coords() const	protocols::relax::RelaxProtocolBase	[inline]
constrain_coords(bool constrain_coords)	protocols::relax::RelaxProtocolBase	[inline]
constrain_coords_	protocols::relax::RelaxProtocolBase	[protected]
constrain_relax_segments() const	protocols::relax::RelaxProtocolBase	[inline]
constrain_relax_segments(bool constrain_relax_segments)	protocols::relax::RelaxProtocolBase	[inline]
constrain_relax_segments_	protocols::relax::RelaxProtocolBase	[protected]
constrain_relax_to_native_coords() const	protocols::relax::RelaxProtocolBase	[inline]
constrain_relax_to_native_coords(bool constrain_relax_to_native_coords)	protocols::relax::RelaxProtocolBase	[inline]
constrain_relax_to_native_coords_	protocols::relax::RelaxProtocolBase	[protected]
constrain_relax_to_start_coords() const	protocols::relax::RelaxProtocolBase	[inline]
constrain_relax_to_start_coords(bool constrain_relax_to_start_coords)	protocols::relax::RelaxProtocolBase	[inline]
constrain_relax_to_start_coords_	protocols::relax::RelaxProtocolBase	[protected]
coord_constrain_sidechains_	protocols::relax::RelaxProtocolBase	[protected]
dry_run() const	protocols::relax::RelaxProtocolBase	[inline]
explicit_ramp_constraints() const	protocols::relax::RelaxProtocolBase	[inline]
explicit_ramp_constraints_	protocols::relax::RelaxProtocolBase	[protected]
Filters_map typedef	protocols::moves::Mover
fresh_instance() const	protocols::relax::RelaxProtocolBase	[inline, virtual]
get_additional_output()	protocols::moves::Mover	[virtual]
get_checkpoints()	protocols::relax::ClassicRelax	[inline]
get_current_job() const	protocols::moves::Mover
get_current_tag() const	protocols::moves::Mover	[inline]
get_input_pose() const	protocols::moves::Mover
get_last_move_status() const	protocols::moves::Mover
get_mc(core::pose::Pose &pose)	protocols::relax::ClassicRelax
get_movemap()	protocols::relax::RelaxProtocolBase
get_name() const	protocols::relax::ClassicRelax	[virtual]
get_native_pose() const	protocols::moves::Mover
get_scorefxn() const	protocols::relax::RelaxProtocolBase
get_scorefxn()	protocols::relax::RelaxProtocolBase	[protected]
get_task_factory() const	protocols::relax::RelaxProtocolBase
get_type() const	protocols::moves::Mover	[inline]
info()	protocols::moves::Mover	[inline, virtual]
info() const	protocols::moves::Mover	[inline, virtual]
initialize_movemap(core::pose::Pose const &pose, core::kinematics::MoveMap &movemap)	protocols::relax::RelaxProtocolBase	[protected]
last_proposal_density_ratio()	protocols::moves::Mover	[inline, virtual]
limit_aroma_chi2() const	protocols::relax::RelaxProtocolBase	[inline]
limit_aroma_chi2_	protocols::relax::RelaxProtocolBase	[protected]
min_type_	protocols::relax::RelaxProtocolBase	[protected]
minimize_bond_angles(bool setting)	protocols::relax::RelaxProtocolBase
minimize_bond_angles() const	protocols::relax::RelaxProtocolBase
minimize_bond_lengths(bool setting)	protocols::relax::RelaxProtocolBase
minimize_bond_lengths() const	protocols::relax::RelaxProtocolBase
minimize_mainchain_bond_angles(bool setting)	protocols::relax::RelaxProtocolBase
minimize_mainchain_bond_angles() const	protocols::relax::RelaxProtocolBase
minimize_mainchain_bond_lengths(bool setting)	protocols::relax::RelaxProtocolBase
minimize_mainchain_bond_lengths() const	protocols::relax::RelaxProtocolBase
Mover()	protocols::moves::Mover
Mover(std::string const &type_name)	protocols::moves::Mover
Mover(Mover const &other)	protocols::moves::Mover
operator=(Mover const &other)	protocols::moves::Mover
output_debug_structure(core::pose::Pose &pose, std::string prefix)	protocols::relax::RelaxProtocolBase	[protected]
parent typedef	protocols::relax::ClassicRelax
parse_my_tag(TagPtr const tag, DataMap &data, Filters_map const &filters, Movers_map const &movers, Pose const &pose)	protocols::moves::Mover	[virtual]
Pose typedef	protocols::moves::Mover
PoseCOP typedef	protocols::moves::Mover
ramp_down_constraints() const	protocols::relax::RelaxProtocolBase	[inline]
ramp_down_constraints(bool ramp_down_constraints)	protocols::relax::RelaxProtocolBase	[inline]
ramp_down_constraints_	protocols::relax::RelaxProtocolBase	[protected]
register_options()	protocols::relax::ClassicRelax	[static]
reinitialize_for_each_job() const	protocols::moves::Mover	[virtual]
reinitialize_for_new_input() const	protocols::moves::Mover	[virtual]
RelaxProtocolBase(core::scoring::ScoreFunctionOP)	protocols::relax::RelaxProtocolBase
RelaxProtocolBase(std::string const &movername="RelaxProtocol")	protocols::relax::RelaxProtocolBase
RelaxProtocolBase(std::string const &movername, core::scoring::ScoreFunctionOP)	protocols::relax::RelaxProtocolBase
reset_status()	protocols::moves::Mover
set_current_job(protocols::jobdist::BasicJobCOP job)	protocols::moves::Mover
set_current_tag(std::string const &new_tag)	protocols::moves::Mover	[inline]
set_default(core::scoring::ScoreFunctionOP scorefxn_in)	protocols::relax::ClassicRelax
set_default(bool const use_default_movemap=true)	protocols::relax::ClassicRelax
set_default_coordinate_settings()	protocols::relax::RelaxProtocolBase
set_default_minimization_settings()	protocols::relax::RelaxProtocolBase
set_default_minimizer()	protocols::relax::ClassicRelax
set_default_movemap()	protocols::relax::RelaxProtocolBase
set_default_moveset_phase1()	protocols::relax::ClassicRelax
set_default_moveset_phase2()	protocols::relax::ClassicRelax
set_default_moveset_phase3()	protocols::relax::ClassicRelax
set_defaults()	protocols::relax::RelaxProtocolBase
set_dry_run(bool setting)	protocols::relax::RelaxProtocolBase	[inline]
set_full_repack(protocols::simple_moves::PackRotamersMoverOP new_pack_full_repack)	protocols::relax::ClassicRelax
set_input_pose(PoseCOP pose)	protocols::moves::Mover	[virtual]
set_last_move_status(MoverStatus status)	protocols::moves::Mover	[protected]
set_lj_ramp_cycles(int param)	protocols::relax::ClassicRelax	[inline]
set_lj_ramp_inner_cycles(int param)	protocols::relax::ClassicRelax	[inline]
set_mc(moves::MonteCarloOP new_mc_)	protocols::relax::ClassicRelax
set_min_type(std::string min_type)	protocols::relax::RelaxProtocolBase
set_movemap(core::kinematics::MoveMapOP movemap)	protocols::relax::RelaxProtocolBase
set_native_pose(PoseCOP pose)	protocols::moves::Mover	[virtual]
set_rottrial(protocols::simple_moves::RotamerTrialsMoverOP new_pack_rottrial)	protocols::relax::ClassicRelax
set_scorefxn(core::scoring::ScoreFunctionOP score)	protocols::relax::RelaxProtocolBase
set_stage2_cycles(int cycles2)	protocols::relax::ClassicRelax	[inline]
set_stage2_repack_period(int repack2)	protocols::relax::ClassicRelax	[inline]
set_stage3_cycles(int cycles3)	protocols::relax::ClassicRelax	[inline]
set_start_rep_weight(core::Real param)	protocols::relax::ClassicRelax	[inline]
set_task_factory(core::pack::task::TaskFactoryOP taskf)	protocols::relax::RelaxProtocolBase
set_tolerance(core::Real new_tolerance)	protocols::relax::ClassicRelax
set_up_constraints(core::pose::Pose &pose, core::kinematics::MoveMap &local_movemap)	protocols::relax::RelaxProtocolBase	[protected]
setPoseExtraScores(core::pose::Pose &pose)	protocols::relax::ClassicRelax
Strings typedef	protocols::moves::Mover
TagPtr typedef	protocols::moves::Mover
test_move(Pose &pose)	protocols::moves::Mover	[inline, virtual]
type() const	protocols::moves::Mover	[inline]
type(const std::string &type_in)	protocols::moves::Mover	[inline]
use_coarse_vdw()	protocols::relax::ClassicRelax	[inline]
~ClassicRelax()	protocols::relax::ClassicRelax	[virtual]
~Mover()	protocols::moves::Mover	[virtual]
~RelaxProtocolBase()	protocols::relax::RelaxProtocolBase