Rosetta 3.4
Variables
doc/apps/public/antibody/antibody.dox File Reference

Variables

Checkout trunk antibody Change
antibody scripts rampaths txt
to set the paths to match your
directory structure Copy the
following files to directory
where simulation will be 
run
Checkout trunk antibody Change
antibody scripts rampaths txt
to set the paths to match your
directory structure Copy the
following files to directory
where simulation will be more
details are provided in
ram_blankcdrs pl Change the
hardcoded paths in the
following file to match your
directory 
structure
Checkout trunk antibody Change
antibody scripts rampaths txt
to set the paths to match your
directory structure Copy the
following files to directory
where simulation will be more
details are provided in
ram_blankcdrs pl Change the
hardcoded paths in the
following file to match your
directory which already 
contains
Checkout trunk antibody Change
antibody scripts rampaths txt
to set the paths to match your
directory structure Copy the
following files to directory
where simulation will be more
details are provided in
ram_blankcdrs pl Change the
hardcoded paths in the
following file to match your
directory which already Kayode
A 
Sanni
Checkout trunk antibody Change
antibody scripts rampaths txt
to set the paths to match your
directory structure Copy the
following files to directory
where simulation will be more
details are provided in
ram_blankcdrs pl Change the
hardcoded paths in the
following file to match your
directory which already Kayode
A Jiye Shi &Jeffrey J 
Gray
Checkout trunk antibody Change
antibody scripts rampaths txt
to set the paths to match your
directory structure Copy the
following files to directory
where simulation will be more
details are provided in
ram_blankcdrs pl Change the
hardcoded paths in the
following file to match your
directory which already Kayode
A Jiye Shi &Jeffrey J Analysis
and Modeling of the Variable
Region of Camelid Single
Domain 
Antibodies
Checkout trunk antibody Change
antibody scripts rampaths txt
to set the paths to match your
directory structure Copy the
following files to directory
where simulation will be more
details are provided in
ram_blankcdrs pl Change the
hardcoded paths in the
following file to match your
directory which already Kayode
A Jiye Shi &Jeffrey J Analysis
and Modeling of the Variable
Region of Camelid Single
Domain J 
Immunology
Checkout trunk antibody Change
antibody scripts rampaths txt
to set the paths to match your
directory structure Copy the
following files to directory
where simulation will be more
details are provided in
ram_blankcdrs pl Change the
hardcoded paths in the
following file to match your
directory which already Kayode
A Jiye Shi &Jeffrey J Analysis
and Modeling of the Variable
Region of Camelid Single
Domain J For classical Fv 
modeling
Checkout trunk antibody Change
antibody scripts rampaths txt
to set the paths to match your
directory structure Copy the
following files to directory
where simulation will be more
details are provided in
ram_blankcdrs pl Change the
hardcoded paths in the
following file to match your
directory which already Kayode
A Jiye Shi &Jeffrey J Analysis
and Modeling of the Variable
Region of Camelid Single
Domain J For classical Fv
Aroop Sircar Sidhartha
Chaudhury &Jeffrey J Toward
high resolution homology
modeling of antibody Fv
regions and application to
antibody antigen 
docking
Checkout trunk antibody Change
antibody scripts rampaths txt
to set the paths to match your
directory structure Copy the
following files to directory
where simulation will be more
details are provided in
ram_blankcdrs pl Change the
hardcoded paths in the
following file to match your
directory which already Kayode
A Jiye Shi &Jeffrey J Analysis
and Modeling of the Variable
Region of Camelid Single
Domain J For classical Fv
Aroop Sircar Sidhartha
Chaudhury &Jeffrey J Toward
high resolution homology
modeling of antibody Fv
regions and application to
antibody antigen 
Proteins
Checkout trunk antibody Change
antibody scripts rampaths txt
to set the paths to match your
directory structure Copy the
following files to directory
where simulation will be more
details are provided in
ram_blankcdrs pl Change the
hardcoded paths in the
following file to match your
directory which already Kayode
A Jiye Shi &Jeffrey J Analysis
and Modeling of the Variable
Region of Camelid Single
Domain J For classical Fv
Aroop Sircar Sidhartha
Chaudhury &Jeffrey J Toward
high resolution homology
modeling of antibody Fv
regions and application to
antibody antigen Function and 
Bioinformatics

Variable Documentation

Checkout trunk antibody Change antibody scripts rampaths txt to set the paths to match your directory structure Copy the following files to directory where simulation will be more details are provided in ram_blankcdrs pl Change the hardcoded paths in the following file to match your directory which already Kayode A Jiye Shi& Jeffrey J Analysis and Modeling of the Variable Region of Camelid Single Domain Antibodies
Checkout trunk antibody Change antibody scripts rampaths txt to set the paths to match your directory structure Copy the following files to directory where simulation will be more details are provided in ram_blankcdrs pl Change the hardcoded paths in the following file to match your directory which already Kayode A Jiye Shi& Jeffrey J Analysis and Modeling of the Variable Region of Camelid Single Domain J For classical Fv Aroop Sircar Sidhartha Chaudhury& Jeffrey J Toward high resolution homology modeling of antibody Fv regions and application to antibody antigen Function and Bioinformatics
Checkout trunk antibody Change antibody scripts rampaths txt to set the paths to match your directory structure Copy the following files to directory where simulation will be more details are provided in ram_blankcdrs pl Change the hardcoded paths in the following file to match your directory which already contains
Checkout trunk antibody Change antibody scripts rampaths txt to set the paths to match your directory structure Copy the following files to directory where simulation will be more details are provided in ram_blankcdrs pl Change the hardcoded paths in the following file to match your directory which already Kayode A Jiye Shi& Jeffrey J Analysis and Modeling of the Variable Region of Camelid Single Domain J For classical Fv Aroop Sircar Sidhartha Chaudhury& Jeffrey J Toward high resolution homology modeling of antibody Fv regions and application to antibody antigen docking
Checkout trunk antibody Change antibody scripts rampaths txt to set the paths to match your directory structure Copy the following files to directory where simulation will be more details are provided in ram_blankcdrs pl Change the hardcoded paths in the following file to match your directory which already Kayode A Jiye Shi &Jeffrey J Analysis and Modeling of the Variable Region of Camelid Single Domain J For classical Fv Aroop Sircar Sidhartha Chaudhury &Jeffrey J Gray
Checkout trunk antibody Change antibody scripts rampaths txt to set the paths to match your directory structure Copy the following files to directory where simulation will be more details are provided in ram_blankcdrs pl Change the hardcoded paths in the following file to match your directory which already Kayode A Jiye Shi& Jeffrey J Analysis and Modeling of the Variable Region of Camelid Single Domain J Immunology
Checkout trunk antibody Change antibody scripts rampaths txt to set the paths to match your directory structure Copy the following files to directory where simulation will be more details are provided in ram_blankcdrs pl Change the hardcoded paths in the following file to match your directory which already Kayode A Jiye Shi& Jeffrey J Analysis and Modeling of the Variable Region of Camelid Single Domain J For classical Fv modeling
Checkout trunk antibody Change antibody scripts rampaths txt to set the paths to match your directory structure Copy the following files to directory where simulation will be more details are provided in ram_blankcdrs pl Change the hardcoded paths in the following file to match your directory which already Kayode A Jiye Shi& Jeffrey J Analysis and Modeling of the Variable Region of Camelid Single Domain J For classical Fv Aroop Sircar Sidhartha Chaudhury& Jeffrey J Toward high resolution homology modeling of antibody Fv regions and application to antibody antigen Proteins
Checkout trunk antibody Change antibody scripts rampaths txt to set the paths to match your directory structure Copy the following files to directory where simulation will be run
Checkout trunk antibody Change antibody scripts rampaths txt to set the paths to match your directory structure Copy the following files to directory where simulation will be more details are provided in ram_blankcdrs pl Change the hardcoded paths in the following file to match your directory which already Kayode A Sanni
Checkout trunk antibody Change antibody scripts rampaths txt to set the paths to match your directory structure Copy the following files to directory where simulation will be more details are provided in ram_blankcdrs pl Change the hardcoded paths in the following file to match your directory structure
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