Rosetta 3.4
Public Member Functions
protocols::protein_interface_design::PatchdockReader Class Reference

#include <read_patchdock.hh>

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List of all members.

Public Member Functions

 PatchdockReader ()
 ~PatchdockReader ()
void read_poses (core::pose::Pose &input_pose, std::string &input_tag)
 if no native is read
void read_poses (core::pose::Pose &input_pose, core::pose::Pose &native_pose, std::string &input_tag, std::string &native_tag)
 reads input and native poses from file. If patchdock flags are used will read the patchdock transformation and transform the input pose accordingly
void read_patchdock (std::string &input_tag, std::string &native_tag)
Transformation read_patchdock_entry ()
void clear_internals ()
core::Size number_of_patchdock_entries ()

Constructor & Destructor Documentation

protocols::protein_interface_design::PatchdockReader::PatchdockReader ( )
protocols::protein_interface_design::PatchdockReader::~PatchdockReader ( )

Member Function Documentation

void protocols::protein_interface_design::PatchdockReader::clear_internals ( )
core::Size protocols::protein_interface_design::PatchdockReader::number_of_patchdock_entries ( )
Detailed: how many entries are there in the patchdock file?
void protocols::protein_interface_design::PatchdockReader::read_patchdock ( std::string &  input_tag,
std::string &  native_tag 
)
Transformation protocols::protein_interface_design::PatchdockReader::read_patchdock_entry ( )
Detailed: read a rigid-body transformation from a patchdock file.
caches transformations in saved_transformations_ to avoid multiple disk access

References core::scoring::hbonds::t(), and core::TR().

void protocols::protein_interface_design::PatchdockReader::read_poses ( core::pose::Pose input_pose,
std::string &  input_tag 
)
void protocols::protein_interface_design::PatchdockReader::read_poses ( core::pose::Pose input_pose,
core::pose::Pose native_pose,
std::string &  input_tag,
std::string &  native_tag 
)

reads input and native poses from file. If patchdock flags are used will read the patchdock transformation and transform the input pose accordingly

If the native and input tags match those saved in the object, then the pose will not be read again from disk. Only the patchdock entry will be read.

References core::import_pose::centroid_pose_from_pdb(), make_table_of_pilot_apps::f, core::pose::Pose::fold_tree(), core::chemical::ChemicalManager::get_instance(), core::import_pose::pose_from_pdb(), core::chemical::ChemicalManager::residue_type_set(), core::scoring::hbonds::t(), core::TR(), and protocols::protein_interface_design::transform_pose().


The documentation for this class was generated from the following files:
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