Rosetta 3.4
|
typedef utility::pointer::owning_ptr< FilterStructs_Packstat > protocols::flxbb::FilterStructs_PackstatOP |
typedef utility::pointer::owning_ptr< FilterStructs_TotalCharge > protocols::flxbb::FilterStructs_TotalChargeOP |
typedef utility::pointer::owning_ptr< LayerDesignOperation > protocols::flxbb::LayerDesignOperationOP |
typedef core::Real protocols::flxbb::Real |
typedef core::Size protocols::flxbb::Size |
typedef std::string protocols::flxbb::String |
ConstraintOPs protocols::flxbb::constraints_NtoC | ( | Pose const & | pose, |
Real const | coef, | ||
Real const | condist | ||
) |
constraint between N- and C-terminal Ca atoms
References core::chemical::ResidueType::atom_index(), core::pose::Pose::residue_type(), core::pose::Pose::total_residue(), and protocols::TR().
Referenced by protocols::flxbb::FlxbbDesign::apply(), protocols::flxbb::FlxbbDesign::read_options(), and protocols::flxbb::FlxbbDesign::register_options().
ConstraintOPs protocols::flxbb::constraints_sheet | ( | Pose const & | pose, |
Real const | coef, | ||
Real const | condist | ||
) |
constrain between Ca atoms in beta sheet
References core::chemical::ResidueType::atom_index(), core::conformation::Residue::atom_index(), core::pose::Pose::residue(), core::pose::Pose::residue_type(), core::scoring::Strands::SS_strand_end, core::pose::Pose::total_residue(), core::scoring::Strands::total_strands, and protocols::TR().
ConstraintOPs protocols::flxbb::constraints_sheet | ( | Pose const & | pose, |
BluePrintOP const & | blue, | ||
Real const | coef, | ||
Real const | condist = 5.5 |
||
) |
constrain hydrogen bonds in beta sheet ( not used )
constrain between Ca atoms in beta sheet, which are specified in blueprint file
References core::chemical::ResidueType::atom_index(), core::pose::Pose::residue_type(), core::pose::Pose::total_residue(), and protocols::TR().
Referenced by protocols::flxbb::FlxbbDesign::apply(), protocols::fldsgn::SheetConstraintsRCG::generate_remodel_constraints(), protocols::flxbb::FlxbbDesign::read_options(), and protocols::flxbb::FlxbbDesign::register_options().
void protocols::flxbb::FlxbbDesign_main | ( | ) |