Rosetta 3.4
Public Member Functions
protocols::protein_interface_design::filters::RelativePoseFilter Class Reference

#include <RelativePoseFilter.hh>

Inheritance diagram for protocols::protein_interface_design::filters::RelativePoseFilter:
Inheritance graph
[legend]
Collaboration diagram for protocols::protein_interface_design::filters::RelativePoseFilter:
Collaboration graph
[legend]

List of all members.

Public Member Functions

 RelativePoseFilter ()
 default ctor
virtual bool apply (core::pose::Pose const &pose) const
 Constructor with a single target residue.
virtual void report (std::ostream &out, core::pose::Pose const &pose) const
virtual core::Real report_sm (core::pose::Pose const &pose) const
 used to report filter internals through a score or silent file
virtual
protocols::filters::FilterOP 
clone () const
virtual
protocols::filters::FilterOP 
fresh_instance () const
core::Real compute (core::pose::Pose const &pose) const
virtual ~RelativePoseFilter ()
void parse_my_tag (utility::tag::TagPtr const tag, protocols::moves::DataMap &, protocols::filters::Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &)
void filter (protocols::filters::FilterOP filter)
protocols::filters::FilterOP filter () const
protocols::moves::MoverOP relax_mover () const
void relax_mover (protocols::moves::MoverOP const mover)
core::pose::PoseOP pose () const
void pose (core::pose::PoseOP p)
std::string dump_pose_fname () const
void dump_pose_fname (std::string const s)
core::scoring::ScoreFunctionOP scorefxn () const
void scorefxn (core::scoring::ScoreFunctionOP const s)
void packing_shell (core::Real const s)
core::Real packing_shell () const
core::pose::PoseOP thread_seq (core::pose::Pose const &p) const
bool thread () const
void thread (bool const t)
bool baseline () const
void baseline (bool const b)
core::Real baseline_val () const
void baseline_val (core::Real const )
bool unbound () const
void unbound (bool const b)
bool copy_stretch () const
void copy_stretch (bool const b)

Constructor & Destructor Documentation

protocols::protein_interface_design::filters::RelativePoseFilter::RelativePoseFilter ( )
protocols::protein_interface_design::filters::RelativePoseFilter::~RelativePoseFilter ( ) [virtual]

Member Function Documentation

bool protocols::protein_interface_design::filters::RelativePoseFilter::apply ( core::pose::Pose const &  pose) const [virtual]

Constructor with a single target residue.

Implements protocols::filters::Filter.

References filter(), and thread_seq().

bool protocols::protein_interface_design::filters::RelativePoseFilter::baseline ( ) const

Referenced by baseline_val(), compute(), and parse_my_tag().

void protocols::protein_interface_design::filters::RelativePoseFilter::baseline ( bool const  b)
core::Real protocols::protein_interface_design::filters::RelativePoseFilter::baseline_val ( ) const

References baseline().

Referenced by compute(), parse_my_tag(), and thread_seq().

void protocols::protein_interface_design::filters::RelativePoseFilter::baseline_val ( core::Real const  b)
protocols::filters::FilterOP protocols::protein_interface_design::filters::RelativePoseFilter::clone ( ) const [virtual]
core::Real protocols::protein_interface_design::filters::RelativePoseFilter::compute ( core::pose::Pose const &  pose) const
bool protocols::protein_interface_design::filters::RelativePoseFilter::copy_stretch ( ) const [inline]

Referenced by parse_my_tag(), and thread_seq().

void protocols::protein_interface_design::filters::RelativePoseFilter::copy_stretch ( bool const  b) [inline]
void protocols::protein_interface_design::filters::RelativePoseFilter::dump_pose_fname ( std::string const  s)
std::string protocols::protein_interface_design::filters::RelativePoseFilter::dump_pose_fname ( ) const

Referenced by compute(), and parse_my_tag().

void protocols::protein_interface_design::filters::RelativePoseFilter::filter ( protocols::filters::FilterOP  filter)

References filter().

protocols::filters::FilterOP protocols::protein_interface_design::filters::RelativePoseFilter::filter ( ) const

Referenced by apply(), compute(), filter(), and parse_my_tag().

protocols::filters::FilterOP protocols::protein_interface_design::filters::RelativePoseFilter::fresh_instance ( ) const [virtual]
void protocols::protein_interface_design::filters::RelativePoseFilter::packing_shell ( core::Real const  s)
core::Real protocols::protein_interface_design::filters::RelativePoseFilter::packing_shell ( ) const

Referenced by parse_my_tag(), and thread_seq().

void protocols::protein_interface_design::filters::RelativePoseFilter::parse_my_tag ( utility::tag::TagPtr const  tag,
protocols::moves::DataMap data,
protocols::filters::Filters_map const &  filters,
protocols::moves::Movers_map const &  movers,
core::pose::Pose const &  p 
) [virtual]

alignment is expecting X1:Y1,X2:Y2,X3:Y3... where X is the protein on disk (target) and Y is the active structure (starting structure). When no alignment is given it is implied that the poses are trivially aligned 1..nres Feb2012 added option to align entire chains: A:B,D:C. Notice that no testing is made to ensure correct lengths etc., simply aligns from the start to end of the chains sequentially.

Reimplemented from protocols::filters::Filter.

References baseline(), baseline_val(), copy_stretch(), dump_pose_fname(), filter(), packing_shell(), protocols::rosetta_scripts::parse_filter(), protocols::rosetta_scripts::parse_mover(), protocols::rosetta_scripts::parse_resnum(), protocols::rosetta_scripts::parse_score_function(), core::pose::Pose::pdb_info(), pose(), core::import_pose::pose_from_pdb(), relax_mover(), report_sm(), scorefxn(), thread(), core::pose::Pose::total_residue(), and unbound().

core::pose::PoseOP protocols::protein_interface_design::filters::RelativePoseFilter::pose ( ) const

Referenced by parse_my_tag(), pose(), and thread_seq().

void protocols::protein_interface_design::filters::RelativePoseFilter::pose ( core::pose::PoseOP  p)

References pose().

protocols::moves::MoverOP protocols::protein_interface_design::filters::RelativePoseFilter::relax_mover ( ) const

Referenced by parse_my_tag(), and thread_seq().

void protocols::protein_interface_design::filters::RelativePoseFilter::relax_mover ( protocols::moves::MoverOP const  mover)
void protocols::protein_interface_design::filters::RelativePoseFilter::report ( std::ostream &  out,
core::pose::Pose const &  pose 
) const [virtual]

Reimplemented from protocols::filters::Filter.

core::Real protocols::protein_interface_design::filters::RelativePoseFilter::report_sm ( core::pose::Pose const &  ) const [virtual]

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

References compute().

Referenced by compute(), and parse_my_tag().

void protocols::protein_interface_design::filters::RelativePoseFilter::scorefxn ( core::scoring::ScoreFunctionOP const  s)

References scorefxn().

core::scoring::ScoreFunctionOP protocols::protein_interface_design::filters::RelativePoseFilter::scorefxn ( ) const
void protocols::protein_interface_design::filters::RelativePoseFilter::thread ( bool const  t)
bool protocols::protein_interface_design::filters::RelativePoseFilter::thread ( ) const

Referenced by parse_my_tag(), and thread_seq().

core::pose::PoseOP protocols::protein_interface_design::filters::RelativePoseFilter::thread_seq ( core::pose::Pose const &  p) const
bool protocols::protein_interface_design::filters::RelativePoseFilter::unbound ( ) const [inline]

Referenced by parse_my_tag(), and thread_seq().

void protocols::protein_interface_design::filters::RelativePoseFilter::unbound ( bool const  b) [inline]

The documentation for this class was generated from the following files:
 All Classes Namespaces Files Functions Variables Typedefs Enumerations Enumerator Friends Defines