Rosetta 3.4
Public Member Functions
protocols::frag_picker::scores::CachingScoringMethod Class Reference

#include <CachingScoringMethod.hh>

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List of all members.

Public Member Functions

 CachingScoringMethod (Size priority, Real lowest_acceptable_value, bool use_lowest, std::string name)
virtual void do_caching (VallChunkOP)=0
virtual void clean_up ()=0
virtual bool cached_score (FragmentCandidateOP, FragmentScoreMapOP)
virtual bool score (FragmentCandidateOP fragment, FragmentScoreMapOP scores)

Constructor & Destructor Documentation

protocols::frag_picker::scores::CachingScoringMethod::CachingScoringMethod ( Size  priority,
Real  lowest_acceptable_value,
bool  use_lowest,
std::string  name 
) [inline]

Member Function Documentation

virtual bool protocols::frag_picker::scores::CachingScoringMethod::cached_score ( FragmentCandidateOP  ,
FragmentScoreMapOP   
) [inline, virtual]

Reimplemented in protocols::frag_picker::scores::ABEGO_SS_Score, protocols::frag_picker::scores::AmbigCSScore, protocols::frag_picker::scores::AtomPairConstraintsScore, protocols::frag_picker::scores::CSScore, protocols::frag_picker::scores::DihedralConstraintsScore, protocols::frag_picker::scores::DisulfideDistance, protocols::frag_picker::scores::FragmentCrmsd, protocols::frag_picker::scores::FragmentCrmsdResDepth, protocols::frag_picker::scores::FragmentDME, protocols::frag_picker::scores::GunnCostScore, protocols::frag_picker::scores::HydrophobicityProfileSimilarity, protocols::frag_picker::scores::HydrophobicitySimilarity, protocols::frag_picker::scores::InterbondAngleScore, protocols::frag_picker::scores::JCoupling, protocols::frag_picker::scores::LAMBEGO_Similarity, protocols::frag_picker::scores::MidPhiOut, protocols::frag_picker::scores::MidPsiOut, protocols::frag_picker::scores::PartialSecondarySimilarity, protocols::frag_picker::scores::PCS_FragDistance, protocols::frag_picker::scores::Phi, protocols::frag_picker::scores::PhiPsiRmsd, protocols::frag_picker::scores::PhiPsiSquareWell, protocols::frag_picker::scores::ProfileScore, protocols::frag_picker::scores::ProfileScoreBlosum62, protocols::frag_picker::scores::ProfileScoreDistWeight, protocols::frag_picker::scores::ProfileScoreL1, protocols::frag_picker::scores::ProfileScoreStructL1, protocols::frag_picker::scores::ProfileScoreSubMatrix, protocols::frag_picker::scores::Psi, protocols::frag_picker::scores::RamaScore, protocols::frag_picker::scores::RDCScore, protocols::frag_picker::scores::SecondarySimilarity, protocols::frag_picker::scores::SolventAccessibility, protocols::frag_picker::scores::TalosSSSimilarity, and protocols::frag_picker::scores::TorsionBinSimilarity.

Referenced by protocols::frag_picker::scores::FragmentScoreManager::score_fragment_from_cache().

virtual void protocols::frag_picker::scores::CachingScoringMethod::clean_up ( ) [pure virtual]

Implemented in protocols::frag_picker::scores::ABEGO_SS_Score, protocols::frag_picker::scores::AmbigCSScore, protocols::frag_picker::scores::AtomBasedConstraintsScore, protocols::frag_picker::scores::CSScore, protocols::frag_picker::scores::DisulfideDistance, protocols::frag_picker::scores::FragmentCrmsd, protocols::frag_picker::scores::FragmentCrmsdResDepth, protocols::frag_picker::scores::FragmentDME, protocols::frag_picker::scores::GunnCostScore, protocols::frag_picker::scores::HydrophobicityProfileSimilarity, protocols::frag_picker::scores::HydrophobicitySimilarity, protocols::frag_picker::scores::JCoupling, protocols::frag_picker::scores::LAMBEGO_Similarity, protocols::frag_picker::scores::MidPhiOut, protocols::frag_picker::scores::MidPsiOut, protocols::frag_picker::scores::PartialSecondarySimilarity, protocols::frag_picker::scores::PCS_FragDistance, protocols::frag_picker::scores::Phi, protocols::frag_picker::scores::PhiPsiRmsd, protocols::frag_picker::scores::PhiPsiSquareWell, protocols::frag_picker::scores::ProfileScore, protocols::frag_picker::scores::ProfileScoreBlosum62, protocols::frag_picker::scores::ProfileScoreDistWeight, protocols::frag_picker::scores::ProfileScoreL1, protocols::frag_picker::scores::ProfileScoreStructL1, protocols::frag_picker::scores::ProfileScoreSubMatrix, protocols::frag_picker::scores::Psi, protocols::frag_picker::scores::RamaScore, protocols::frag_picker::scores::RDCScore, protocols::frag_picker::scores::RDCScore, protocols::frag_picker::scores::ScoreEValuator, protocols::frag_picker::scores::SecondarySimilarity, protocols::frag_picker::scores::SolventAccessibility, protocols::frag_picker::scores::TalosSSSimilarity, and protocols::frag_picker::scores::TorsionBinSimilarity.

Referenced by protocols::frag_picker::scores::FragmentScoreManager::clean_up().

virtual void protocols::frag_picker::scores::CachingScoringMethod::do_caching ( VallChunkOP  ) [pure virtual]

Implemented in protocols::frag_picker::scores::ABEGO_SS_Score, protocols::frag_picker::scores::AmbigCSScore, protocols::frag_picker::scores::AtomBasedConstraintsScore, protocols::frag_picker::scores::CSScore, protocols::frag_picker::scores::DisulfideDistance, protocols::frag_picker::scores::FragmentCrmsd, protocols::frag_picker::scores::FragmentCrmsdResDepth, protocols::frag_picker::scores::FragmentDME, protocols::frag_picker::scores::GunnCostScore, protocols::frag_picker::scores::HydrophobicityProfileSimilarity, protocols::frag_picker::scores::HydrophobicitySimilarity, protocols::frag_picker::scores::JCoupling, protocols::frag_picker::scores::LAMBEGO_Similarity, protocols::frag_picker::scores::MidPhiOut, protocols::frag_picker::scores::MidPsiOut, protocols::frag_picker::scores::PartialSecondarySimilarity, protocols::frag_picker::scores::PCS_FragDistance, protocols::frag_picker::scores::Phi, protocols::frag_picker::scores::PhiPsiRmsd, protocols::frag_picker::scores::PhiPsiSquareWell, protocols::frag_picker::scores::ProfileScore, protocols::frag_picker::scores::ProfileScoreBlosum62, protocols::frag_picker::scores::ProfileScoreDistWeight, protocols::frag_picker::scores::ProfileScoreL1, protocols::frag_picker::scores::ProfileScoreStructL1, protocols::frag_picker::scores::ProfileScoreSubMatrix, protocols::frag_picker::scores::Psi, protocols::frag_picker::scores::RamaScore, protocols::frag_picker::scores::RDCScore, protocols::frag_picker::scores::RDCScore, protocols::frag_picker::scores::ScoreEValuator, protocols::frag_picker::scores::SecondarySimilarity, protocols::frag_picker::scores::SolventAccessibility, protocols::frag_picker::scores::TalosSSSimilarity, and protocols::frag_picker::scores::TorsionBinSimilarity.

Referenced by protocols::frag_picker::scores::FragmentScoreManager::do_caching().

virtual bool protocols::frag_picker::scores::CachingScoringMethod::score ( FragmentCandidateOP  fragment,
FragmentScoreMapOP  scores 
) [inline, virtual]

Implements protocols::frag_picker::scores::FragmentScoringMethod.

Reimplemented in protocols::frag_picker::scores::ABEGO_SS_Score, protocols::frag_picker::scores::AmbigCSScore, protocols::frag_picker::scores::CSScore, protocols::frag_picker::scores::DisulfideDistance, protocols::frag_picker::scores::FragmentCrmsd, protocols::frag_picker::scores::FragmentCrmsdResDepth, protocols::frag_picker::scores::FragmentDME, protocols::frag_picker::scores::GunnCostScore, protocols::frag_picker::scores::HydrophobicityProfileSimilarity, protocols::frag_picker::scores::HydrophobicitySimilarity, protocols::frag_picker::scores::JCoupling, protocols::frag_picker::scores::MidPhiOut, protocols::frag_picker::scores::MidPsiOut, protocols::frag_picker::scores::PartialSecondarySimilarity, protocols::frag_picker::scores::PCS_FragDistance, protocols::frag_picker::scores::Phi, protocols::frag_picker::scores::PhiPsiRmsd, protocols::frag_picker::scores::PhiPsiSquareWell, protocols::frag_picker::scores::ProfileScoreBlosum62, protocols::frag_picker::scores::ProfileScoreL1, protocols::frag_picker::scores::ProfileScoreStructL1, protocols::frag_picker::scores::ProfileScoreSubMatrix, protocols::frag_picker::scores::Psi, protocols::frag_picker::scores::RamaScore, protocols::frag_picker::scores::RDCScore, protocols::frag_picker::scores::RDCScore, protocols::frag_picker::scores::ScoreEValuator, protocols::frag_picker::scores::SecondarySimilarity, protocols::frag_picker::scores::SolventAccessibility, and protocols::frag_picker::scores::TalosSSSimilarity.


The documentation for this class was generated from the following file:
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