core::scoring::rna::RNA_BulgeEnergy Class Reference

#include <RNA_BulgeEnergy.hh>

Inheritance diagram for core::scoring::rna::RNA_BulgeEnergy:

Collaboration diagram for core::scoring::rna::RNA_BulgeEnergy:

List of all members.

Public Types
typedef core::scoring::methods::ContextIndependentOneBodyEnergy	parent
Public Member Functions
	RNA_BulgeEnergy ()
	ctor
virtual	~RNA_BulgeEnergy ()
	dtor
virtual core::scoring::methods::EnergyMethodOP	clone () const
	clone
virtual void	residue_energy (conformation::Residue const &rsd, pose::Pose const &, EnergyMap &emap) const
virtual Real	eval_dof_derivative (id::DOF_ID const &dof_id, id::TorsionID const &tor_id, pose::Pose const &pose, ScoreFunction const &sfxn, EnergyMap const &weights) const
virtual void	indicate_required_context_graphs (utility::vector1< bool > &) const
	RNA_BulgeEnergy is context independent; indicates that no context graphs are required.
virtual core::Size	version () const
	Return the version of the energy method.

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Member Typedef Documentation

typedef core::scoring::methods::ContextIndependentOneBodyEnergy core::scoring::rna::RNA_BulgeEnergy::parent

Reimplemented from core::scoring::methods::ContextIndependentOneBodyEnergy.

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Constructor & Destructor Documentation

core::scoring::rna::RNA_BulgeEnergy::RNA_BulgeEnergy

(

)

ctor

Referenced by clone().

core::scoring::rna::RNA_BulgeEnergy::~RNA_BulgeEnergy

(

)

[virtual]

dtor

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Member Function Documentation

core::scoring::methods::EnergyMethodOP core::scoring::rna::RNA_BulgeEnergy::clone

(

)

const [virtual]

clone

Implements core::scoring::methods::EnergyMethod.

References RNA_BulgeEnergy().

Real core::scoring::rna::RNA_BulgeEnergy::eval_dof_derivative	(	id::DOF_ID const &	dof_id,
		id::TorsionID const &	tor_id,
		pose::Pose const &	pose,
		ScoreFunction const &	sfxn,
		EnergyMap const &	weights
	)		const [virtual]

void core::scoring::rna::RNA_BulgeEnergy::indicate_required_context_graphs

(

utility::vector1< bool > &

)

const [virtual]

RNA_BulgeEnergy is context independent; indicates that no context graphs are required.

Implements core::scoring::methods::EnergyMethod.

void core::scoring::rna::RNA_BulgeEnergy::residue_energy	(	conformation::Residue const &	rsd,
		pose::Pose const &	,
		EnergyMap &	emap
	)		const [virtual]

Allocate the scratch space object on the stack to alieviate thread-safety concerns. Scratch does not use new.

Implements core::scoring::methods::ContextIndependentOneBodyEnergy.

References core::conformation::Residue::has_variant_type(), core::conformation::Residue::is_RNA(), and core::scoring::rna_bulge.

core::Size core::scoring::rna::RNA_BulgeEnergy::version

(

)

const [virtual]

Return the version of the energy method.

Implements core::scoring::methods::EnergyMethod.

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The documentation for this class was generated from the following files:

• src/core/scoring/rna/RNA_BulgeEnergy.hh
• src/core/scoring/rna/RNA_BulgeEnergy.cc