protocols::frag_picker::scores::AmbigCSScore Class Reference

scores a fragment by the root mean square deviation of Phi and Psi angles. More...

#include <AmbigCSScore.hh>

Inheritance diagram for protocols::frag_picker::scores::AmbigCSScore:

Collaboration diagram for protocols::frag_picker::scores::AmbigCSScore:

List of all members.

Public Member Functions
	AmbigCSScore (Size, Real, bool, CSTalosIO &, CSTalosIO &)
	creates a Phi-Psi-based scoring function.
void	do_caching (VallChunkOP)
void	clean_up ()
bool	score (FragmentCandidateOP, FragmentScoreMapOP)
bool	cached_score (FragmentCandidateOP, FragmentScoreMapOP)

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Detailed Description

scores a fragment by the root mean square deviation of Phi and Psi angles.

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Constructor & Destructor Documentation

protocols::frag_picker::scores::AmbigCSScore::AmbigCSScore	(	Size	priority,
		Real	lowest_acceptable_value,
		bool	use_lowest,
		CSTalosIO &	readerA,
		CSTalosIO &	readerB
	)

creates a Phi-Psi-based scoring function.

Detailed: Phi-Psi angles from a fragment will be compared to relevant angles in a given pose, which should have the same number of residues a the query sequence

References protocols::frag_picker::CS2ndShift::shifts(), and protocols::frag_picker::scores::trAmbigCSScore().

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Member Function Documentation

bool protocols::frag_picker::scores::AmbigCSScore::cached_score	(	FragmentCandidateOP	fragment,
		FragmentScoreMapOP	scores
	)		[virtual]

Reimplemented from protocols::frag_picker::scores::CachingScoringMethod.

References do_caching(), protocols::frag_picker::scores::FragmentScoringMethod::id_, protocols::frag_picker::scores::FragmentScoringMethod::lowest_acceptable_value_, and protocols::frag_picker::scores::FragmentScoringMethod::use_lowest_.

Referenced by score().

void protocols::frag_picker::scores::AmbigCSScore::clean_up

(

)

[virtual]

Implements protocols::frag_picker::scores::CachingScoringMethod.

void protocols::frag_picker::scores::AmbigCSScore::do_caching

(

VallChunkOP

current_chunk

)

[virtual]

Implements protocols::frag_picker::scores::CachingScoringMethod.

References protocols::match::upstream::b, make_table_of_pilot_apps::d, and protocols::frag_picker::scores::trAmbigCSScore().

Referenced by cached_score().

bool protocols::frag_picker::scores::AmbigCSScore::score	(	FragmentCandidateOP	fragment,
		FragmentScoreMapOP	scores
	)		[virtual]

Reimplemented from protocols::frag_picker::scores::CachingScoringMethod.

References cached_score().

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The documentation for this class was generated from the following files:

• src/protocols/frag_picker/scores/AmbigCSScore.hh
• src/protocols/frag_picker/scores/AmbigCSScore.cc