Rosetta 3.4
Public Member Functions
protocols::protein_interface_design::movers::LoopFinder Class Reference

#include <LoopFinder.hh>

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List of all members.

Public Member Functions

 LoopFinder ()
 LoopFinder (bool const interface, bool const ch1, bool const ch2, core::Size const min_length, core::Size const max_length, core::Size const mingap, core::Size const resnum, core::Real const ca_ca_distance, core::Real const iface_cutoff, protocols::loops::LoopsOP loops)
virtual ~LoopFinder ()
protocols::moves::MoverOP clone () const
 clone has to be overridden only if clone invocation is expected.
protocols::moves::MoverOP fresh_instance () const
 this is like clone(), except it generates a new mover object freshly created with the default ctor. This function _should_ be pure virtual but that would disrupt the code base; MAKE SURE YOU DEFINE IT if you want to have your mover be a protocol handed to the job distributor (august 08 vintage).
void apply (core::pose::Pose &pose)
 a dummy apply so that instantiation of this baseclass would be possible.
virtual std::string get_name () const
 Each derived class must specify its name. The class name.
void parse_my_tag (utility::tag::TagPtr const tag, protocols::moves::DataMap &data, protocols::filters::Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &)
 Called by MoverFactory when constructing new Movers. Takes care of the specific mover's parsing.

Constructor & Destructor Documentation

protocols::protein_interface_design::movers::LoopFinder::LoopFinder ( )

Referenced by clone().

protocols::protein_interface_design::movers::LoopFinder::LoopFinder ( bool const  interface,
bool const  ch1,
bool const  ch2,
core::Size const  min_length,
core::Size const  max_length,
core::Size const  mingap,
core::Size const  resnum,
core::Real const  ca_ca_distance,
core::Real const  iface_cutoff,
protocols::loops::LoopsOP  loops 
)
protocols::protein_interface_design::movers::LoopFinder::~LoopFinder ( ) [virtual]

Member Function Documentation

void protocols::protein_interface_design::movers::LoopFinder::apply ( core::pose::Pose ) [virtual]
protocols::moves::MoverOP protocols::protein_interface_design::movers::LoopFinder::clone ( ) const [virtual]

clone has to be overridden only if clone invocation is expected.

clone is meant to return an OP'ed deep copy of this object. This really should be a pure virtual in the base class, but adding pure virtuals to Mover would massively disrupt the code. This default implementation crashes at runtime instead of compiletime if you try to call it. If this code is causing you problems, your Mover needs to override this function.

Implements protocols::simple_moves::DesignRepackMover.

References LoopFinder().

protocols::moves::MoverOP protocols::protein_interface_design::movers::LoopFinder::fresh_instance ( ) const [inline, virtual]

this is like clone(), except it generates a new mover object freshly created with the default ctor. This function _should_ be pure virtual but that would disrupt the code base; MAKE SURE YOU DEFINE IT if you want to have your mover be a protocol handed to the job distributor (august 08 vintage).

fresh_instance is meant to return a new object of this class, created with the default constructor. This really should be a pure virtual in the base class, but adding pure virtuals to Mover would massively disrupt the code. This default implementation crashes at runtime instead of compiletime if you try to call it. If this code is causing you problems, your Mover needs to override this function. This is used by the August 08 job distributor.

Implements protocols::simple_moves::DesignRepackMover.

std::string protocols::protein_interface_design::movers::LoopFinder::get_name ( ) const [virtual]

Each derived class must specify its name. The class name.

Reimplemented from protocols::simple_moves::DesignRepackMover.

References protocols::protein_interface_design::movers::LoopFinderCreator::mover_name().

void protocols::protein_interface_design::movers::LoopFinder::parse_my_tag ( utility::tag::TagPtr const  tag,
protocols::moves::DataMap data,
protocols::filters::Filters_map const &  filters,
protocols::moves::Movers_map const &  movers,
core::pose::Pose const &  pose 
) [virtual]

Called by MoverFactory when constructing new Movers. Takes care of the specific mover's parsing.

Some movers need not be parsed, so we shouldn't stop executions. This, however, calls attention to the lack of this method, which could be due to something as silly as a wrong parameters definition.

Reimplemented from protocols::simple_moves::DesignRepackMover.

References protocols::moves::DataMap::add(), protocols::rosetta_scripts::get_resnum(), core::pose::Pose::num_jump(), and protocols::protein_interface_design::movers::TR().


The documentation for this class was generated from the following files:
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