Rosetta 3.4
Public Member Functions
protocols::frag_picker::scores::FragmentDME Class Reference

scores a fragment by its DME to the given reference structure More...

#include <FragmentDME.hh>

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List of all members.

Public Member Functions

 FragmentDME (Size, Real, bool, core::pose::PoseOP)
 creates a DME-based scoring function.
 FragmentDME (Size, Real, bool, utility::vector1< utility::vector1< Real > >)
 creates a DME-based scoring function.
 ~FragmentDME ()
void do_caching (VallChunkOP)
void clean_up ()
bool score (FragmentCandidateOP, FragmentScoreMapOP)
bool cached_score (FragmentCandidateOP, FragmentScoreMapOP)

Detailed Description

scores a fragment by its DME to the given reference structure


Constructor & Destructor Documentation

protocols::frag_picker::scores::FragmentDME::FragmentDME ( Size  priority,
Real  lowest_acceptable_value,
bool  use_lowest,
core::pose::PoseOP  reference_pose 
)

creates a DME-based scoring function.

Detailed: fragments will be compared to a given pose, which should have the same number of residues a the query sequence
protocols::frag_picker::scores::FragmentDME::FragmentDME ( Size  priority,
Real  lowest_acceptable_value,
bool  use_lowest,
utility::vector1< utility::vector1< Real > >  xyz 
)

creates a DME-based scoring function.

Detailed: fragments will be compared to given coordinates, which should have the same number of residues a the query sequence

References make_table_of_pilot_apps::d, protocols::frag_picker::scores::trDMEScore(), and protocols::kinmatch::xyz().

protocols::frag_picker::scores::FragmentDME::~FragmentDME ( )

Member Function Documentation

bool protocols::frag_picker::scores::FragmentDME::cached_score ( FragmentCandidateOP  fragment,
FragmentScoreMapOP  scores 
) [virtual]
void protocols::frag_picker::scores::FragmentDME::clean_up ( ) [virtual]
void protocols::frag_picker::scores::FragmentDME::do_caching ( VallChunkOP  current_chunk) [virtual]
bool protocols::frag_picker::scores::FragmentDME::score ( FragmentCandidateOP  f,
FragmentScoreMapOP  empty_map 
) [virtual]

The documentation for this class was generated from the following files:
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