Rosetta 3.4
Public Types | Public Member Functions
core::scoring::methods::MembraneLipo Class Reference

#include <MembraneLipo.hh>

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List of all members.

Public Types

typedef WholeStructureEnergy parent

Public Member Functions

 MembraneLipo ()
 c-tor
virtual EnergyMethodOP clone () const
 clone
void finalize_total_energy (pose::Pose &pose, ScoreFunction const &, EnergyMap &totals) const
 called by the ScoreFunction at the end of energy evaluation. The derived class has the opportunity to accumulate a score into the pose's total_energy EnergyMap. WholeStructure energies operate within this method; any method using a NeighborList during minimization would also operate within this function call.
virtual void setup_for_scoring (pose::Pose &pose, ScoreFunction const &) const
 Calculate the RMS difference between native_pose_ (provided by the option -in::file::native and the given Pose. The actual energy calculation is the difference between the RMSD and the target RMSD. Target RMSD is specified the option -score::rms_target.
void indicate_required_context_graphs (utility::vector1< bool > &) const
 Indicate in the context-graphs-required list which context-graphs this energy method requires that the Pose maintain when doing neighbor evaluation. Context graphs are allowed.

Member Typedef Documentation


Constructor & Destructor Documentation

core::scoring::methods::MembraneLipo::MembraneLipo ( )

c-tor

Referenced by clone().


Member Function Documentation

EnergyMethodOP core::scoring::methods::MembraneLipo::clone ( ) const [virtual]
void core::scoring::methods::MembraneLipo::finalize_total_energy ( pose::Pose pose,
ScoreFunction const &  sfxn,
EnergyMap total_energy 
) const [virtual]
void core::scoring::methods::MembraneLipo::indicate_required_context_graphs ( utility::vector1< bool > &  context_graphs_required) const [inline, virtual]

Indicate in the context-graphs-required list which context-graphs this energy method requires that the Pose maintain when doing neighbor evaluation. Context graphs are allowed.

Implements core::scoring::methods::EnergyMethod.

void core::scoring::methods::MembraneLipo::setup_for_scoring ( pose::Pose pose,
ScoreFunction const &   
) const [virtual]

Calculate the RMS difference between native_pose_ (provided by the option -in::file::native and the given Pose. The actual energy calculation is the difference between the RMSD and the target RMSD. Target RMSD is specified the option -score::rms_target.

Reimplemented from core::scoring::methods::EnergyMethod.

References core::scoring::EnvPairPotential::compute_centroid_environment(), and core::pose::Pose::update_residue_neighbors().


The documentation for this class was generated from the following files:
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