core::scoring::hackelec::HackElecEnergy Member List

This is the complete list of members for core::scoring::hackelec::HackElecEnergy, including all inherited members.

__pad0__	core::scoring::hackelec::HackElecEnergy
atomic_interaction_cutoff() const	core::scoring::hackelec::HackElecEnergy	[virtual]
backbone_backbone_energy(conformation::Residue const &rsd1, conformation::Residue const &rsd2, pose::Pose const &pose, ScoreFunction const &sfxn, EnergyMap &emap) const	core::scoring::hackelec::HackElecEnergy	[virtual]
backbone_sidechain_energy(conformation::Residue const &rsd1, conformation::Residue const &rsd2, pose::Pose const &pose, ScoreFunction const &sfxn, EnergyMap &emap) const	core::scoring::hackelec::HackElecEnergy	[virtual]
bump_energy_backbone(conformation::Residue const &, conformation::Residue const &, pose::Pose const &, ScoreFunction const &, EnergyMap &) const	core::scoring::methods::TwoBodyEnergy	[virtual]
bump_energy_full(conformation::Residue const &, conformation::Residue const &, pose::Pose const &, ScoreFunction const &, EnergyMap &) const	core::scoring::methods::TwoBodyEnergy	[virtual]
clone() const	core::scoring::hackelec::HackElecEnergy	[virtual]
ContextIndependentTwoBodyEnergy(EnergyMethodCreatorOP)	core::scoring::methods::ContextIndependentTwoBodyEnergy
defines_high_order_terms(pose::Pose const &) const	core::scoring::methods::EnergyMethod	[virtual]
defines_intrares_dof_derivatives(pose::Pose const &p) const	core::scoring::methods::TwoBodyEnergy	[virtual]
defines_intrares_energy(EnergyMap const &) const	core::scoring::hackelec::HackElecEnergy	[inline, virtual]
defines_intrares_energy_for_residue(conformation::Residue const &res) const	core::scoring::methods::TwoBodyEnergy	[virtual]
defines_score_for_residue_pair(conformation::Residue const &res1, conformation::Residue const &res2, bool res_moving_wrt_eachother) const	core::scoring::hackelec::HackElecEnergy	[virtual]
divides_backbone_and_sidechain_energetics() const	core::scoring::hackelec::HackElecEnergy	[inline, virtual]
EnergyMethod(EnergyMethodCreatorOP creator)	core::scoring::methods::EnergyMethod
EnergyMethod(EnergyMethod const &src)	core::scoring::methods::EnergyMethod
eval_atom_atom_hack_elecE(Vector const &i_xyz, Real const i_charge, Vector const &j_xyz, Real const j_charge) const	core::scoring::hackelec::HackElecEnergy	[inline]
eval_atom_derivative(id::AtomID const &id, pose::Pose const &pose, kinematics::DomainMap const &domain_map, ScoreFunction const &sfxn, EnergyMap const &emap, Vector &F1, Vector &F2) const	core::scoring::methods::EnergyMethod	[virtual]
eval_dhack_elecE_dr_over_r(Real const dis2, Real const q1, Real const q2) const	core::scoring::hackelec::HackElecEnergy	[inline, protected]
eval_intrares_derivatives(conformation::Residue const &rsd, ResSingleMinimizationData const &min_data, pose::Pose const &pose, EnergyMap const &weights, utility::vector1< DerivVectorPair > &atom_derivs) const	core::scoring::methods::TwoBodyEnergy	[virtual]
eval_intrares_energy(conformation::Residue const &, pose::Pose const &, ScoreFunction const &, EnergyMap &) const	core::scoring::hackelec::HackElecEnergy	[inline, virtual]
eval_intrares_energy_ext(conformation::Residue const &rsd, ResSingleMinimizationData const &data_cache, pose::Pose const &pose, ScoreFunction const &sfxn, EnergyMap &emap) const	core::scoring::methods::TwoBodyEnergy	[virtual]
eval_intraresidue_dof_derivative(conformation::Residue const &rsd, ResSingleMinimizationData const &min_data, id::DOF_ID const &dof_id, id::TorsionID const &torsion_id, pose::Pose const &pose, ScoreFunction const &sfxn, EnergyMap const &weights) const	core::scoring::methods::TwoBodyEnergy	[virtual]
eval_residue_pair_derivatives(conformation::Residue const &rsd1, conformation::Residue const &rsd2, ResSingleMinimizationData const &, ResSingleMinimizationData const &, ResPairMinimizationData const &min_data, pose::Pose const &pose, EnergyMap const &weights, utility::vector1< DerivVectorPair > &r1_atom_derivs, utility::vector1< DerivVectorPair > &r2_atom_derivs) const	core::scoring::hackelec::HackElecEnergy	[virtual]
evaluate_rotamer_background_energies(conformation::RotamerSetBase const &set, conformation::Residue const &residue, pose::Pose const &pose, ScoreFunction const &sfxn, EnergyMap const &weights, utility::vector1< core::PackerEnergy > &energy_vector) const	core::scoring::hackelec::HackElecEnergy	[virtual]
evaluate_rotamer_background_energy_maps(conformation::RotamerSetBase const &set, conformation::Residue const &residue, pose::Pose const &pose, ScoreFunction const &sfxn, EnergyMap const &weights, utility::vector1< EnergyMap > &emaps) const	core::scoring::methods::ShortRangeTwoBodyEnergy	[virtual]
evaluate_rotamer_intrares_energies(conformation::RotamerSetBase const &set, pose::Pose const &pose, ScoreFunction const &sfxn, utility::vector1< core::PackerEnergy > &energies) const	core::scoring::methods::TwoBodyEnergy	[virtual]
evaluate_rotamer_intrares_energy_maps(conformation::RotamerSetBase const &set, pose::Pose const &pose, ScoreFunction const &sfxn, utility::vector1< EnergyMap > &emaps) const	core::scoring::methods::TwoBodyEnergy	[virtual]
evaluate_rotamer_pair_energies(conformation::RotamerSetBase const &set1, conformation::RotamerSetBase const &set2, pose::Pose const &pose, ScoreFunction const &sfxn, EnergyMap const &weights, ObjexxFCL::FArray2D< core::PackerEnergy > &energy_table) const	core::scoring::hackelec::HackElecEnergy	[virtual]
finalize_after_derivatives(pose::Pose &, ScoreFunction const &) const	core::scoring::methods::EnergyMethod	[virtual]
finalize_total_energy(pose::Pose &pose, ScoreFunction const &, EnergyMap &totals) const	core::scoring::hackelec::HackElecEnergy	[virtual]
get_count_pair_function(Size const, Size const, pose::Pose const &, ScoreFunction const &) const	core::scoring::hackelec::HackElecEnergy
get_count_pair_function(conformation::Residue const &rsd1, conformation::Residue const &rsd2) const	core::scoring::hackelec::HackElecEnergy
get_intrares_countpair(conformation::Residue const &, pose::Pose const &, ScoreFunction const &) const	core::scoring::hackelec::HackElecEnergy
hackelec_weight(bool at1isbb, bool at2isbb) const	core::scoring::hackelec::HackElecEnergy	[inline]
hackelec_weight(bool at1isbb, bool at2isbb, weight_triple const &wts) const	core::scoring::hackelec::HackElecEnergy	[inline]
HackElecEnergy(methods::EnergyMethodOptions const &options)	core::scoring::hackelec::HackElecEnergy
HackElecEnergy(HackElecEnergy const &src)	core::scoring::hackelec::HackElecEnergy
heavyatom_heavyatom_energy(ElecAtom const &at1, ElecAtom const &at2, DistanceSquared &d2, Size &) const	core::scoring::hackelec::HackElecEnergy	[inline]
heavyatom_hydrogenatom_energy(ElecAtom const &at1, ElecAtom const &at2, Size &) const	core::scoring::hackelec::HackElecEnergy	[inline]
hydrogen_interaction_cutoff() const	core::scoring::hackelec::HackElecEnergy	[inline]
hydrogen_interaction_cutoff2() const	core::scoring::hackelec::HackElecEnergy	[inline]
hydrogenatom_heavyatom_energy(ElecAtom const &at1, ElecAtom const &at2, Size &) const	core::scoring::hackelec::HackElecEnergy	[inline]
hydrogenatom_hydrogenatom_energy(ElecAtom const &at1, ElecAtom const &at2, Size &) const	core::scoring::hackelec::HackElecEnergy	[inline]
indicate_required_context_graphs(utility::vector1< bool > &context_graphs_required) const	core::scoring::hackelec::HackElecEnergy	[virtual]
initialize()	core::scoring::hackelec::HackElecEnergy
method_type() const	core::scoring::methods::ContextIndependentTwoBodyEnergy	[virtual]
minimize_in_whole_structure_context(pose::Pose const &pose) const	core::scoring::hackelec::HackElecEnergy	[virtual]
parent typedef	core::scoring::methods::ContextIndependentTwoBodyEnergy
prepare_rotamers_for_packing(pose::Pose const &pose, conformation::RotamerSetBase &set) const	core::scoring::hackelec::HackElecEnergy	[virtual]
requires_a_setup_for_derivatives_for_residue_opportunity(pose::Pose const &pose) const	core::scoring::methods::TwoBodyEnergy	[virtual]
requires_a_setup_for_derivatives_for_residue_pair_opportunity(pose::Pose const &pose) const	core::scoring::methods::TwoBodyEnergy	[virtual]
requires_a_setup_for_scoring_for_residue_opportunity(pose::Pose const &pose) const	core::scoring::methods::TwoBodyEnergy	[virtual]
requires_a_setup_for_scoring_for_residue_pair_opportunity(pose::Pose const &pose) const	core::scoring::methods::TwoBodyEnergy	[virtual]
residue_pair_energy(conformation::Residue const &rsd1, conformation::Residue const &rsd2, pose::Pose const &pose, ScoreFunction const &, EnergyMap &emap) const	core::scoring::hackelec::HackElecEnergy	[virtual]
residue_pair_energy_ext(conformation::Residue const &rsd1, conformation::Residue const &rsd2, ResPairMinimizationData const &min_data, pose::Pose const &pose, ScoreFunction const &sfxn, EnergyMap &emap) const	core::scoring::hackelec::HackElecEnergy	[virtual]
score_types() const	core::scoring::methods::EnergyMethod	[inline]
set_score_types(EnergyMethodCreatorOP creator)	core::scoring::methods::EnergyMethod	[protected]
setup_for_derivatives(pose::Pose &pose, ScoreFunction const &) const	core::scoring::hackelec::HackElecEnergy	[virtual]
setup_for_derivatives_for_residue(conformation::Residue const &rsd, pose::Pose const &pose, ScoreFunction const &sfxn, ResSingleMinimizationData &min_data) const	core::scoring::methods::TwoBodyEnergy	[virtual]
setup_for_derivatives_for_residue_pair(conformation::Residue const &rsd1, conformation::Residue const &rsd2, ResSingleMinimizationData const &minsingle_data1, ResSingleMinimizationData const &minsingle_data2, pose::Pose const &pose, ScoreFunction const &sfxn, ResPairMinimizationData &data_cache) const	core::scoring::methods::TwoBodyEnergy	[virtual]
setup_for_minimizing(pose::Pose &pose, ScoreFunction const &sfxn, kinematics::MinimizerMapBase const &min_map) const	core::scoring::hackelec::HackElecEnergy	[virtual]
setup_for_minimizing_for_residue(conformation::Residue const &rsd, pose::Pose const &pose, ScoreFunction const &sfxn, kinematics::MinimizerMapBase const &minmap, ResSingleMinimizationData &res_data_cache) const	core::scoring::methods::TwoBodyEnergy	[virtual]
setup_for_minimizing_for_residue_pair(conformation::Residue const &rsd1, conformation::Residue const &rsd2, pose::Pose const &pose, ScoreFunction const &sfxn, kinematics::MinimizerMapBase const &minmap, ResSingleMinimizationData const &res1_data_cache, ResSingleMinimizationData const &res2_data_cache, ResPairMinimizationData &data_cache) const	core::scoring::hackelec::HackElecEnergy	[virtual]
setup_for_packing(pose::Pose &pose, utility::vector1< bool > const &, utility::vector1< bool > const &) const	core::scoring::hackelec::HackElecEnergy	[virtual]
setup_for_scoring(pose::Pose &pose, ScoreFunction const &) const	core::scoring::hackelec::HackElecEnergy	[virtual]
setup_for_scoring_for_residue(conformation::Residue const &rsd, pose::Pose const &pose, ScoreFunction const &sfxn, ResSingleMinimizationData &min_data) const	core::scoring::methods::TwoBodyEnergy	[virtual]
setup_for_scoring_for_residue_pair(conformation::Residue const &rsd1, conformation::Residue const &rsd2, ResSingleMinimizationData const &minsingle_data1, ResSingleMinimizationData const &minsingle_data2, pose::Pose const &pose, ScoreFunction const &sfxn, ResPairMinimizationData &data_cache) const	core::scoring::methods::TwoBodyEnergy	[virtual]
ShortRangeTwoBodyEnergy(EnergyMethodCreatorOP)	core::scoring::methods::ShortRangeTwoBodyEnergy
sidechain_sidechain_energy(conformation::Residue const &rsd1, conformation::Residue const &rsd2, pose::Pose const &pose, ScoreFunction const &sfxn, EnergyMap &emap) const	core::scoring::hackelec::HackElecEnergy	[virtual]
TwoBodyEnergy(EnergyMethodCreatorOP)	core::scoring::methods::TwoBodyEnergy
update_residue_for_packing(pose::Pose &pose, Size resid) const	core::scoring::hackelec::HackElecEnergy	[virtual]
core::scoring::methods::ContextIndependentTwoBodyEnergy::update_residue_for_packing(pose::Pose &, Size resid) const	core::scoring::methods::EnergyMethod	[virtual]
use_extended_intrares_energy_interface() const	core::scoring::methods::TwoBodyEnergy	[virtual]
use_extended_residue_pair_energy_interface() const	core::scoring::hackelec::HackElecEnergy	[virtual]
~ContextIndependentTwoBodyEnergy()	core::scoring::methods::ContextIndependentTwoBodyEnergy	[virtual]
~EnergyMethod()	core::scoring::methods::EnergyMethod	[virtual]
~ShortRangeTwoBodyEnergy()	core::scoring::methods::ShortRangeTwoBodyEnergy	[virtual]
~TwoBodyEnergy()	core::scoring::methods::TwoBodyEnergy	[virtual]