protocols::simple_moves::symmetry::SymShakeStructureMover Class Reference

#include <SymShakeStructureMover.hh>

Inheritance diagram for protocols::simple_moves::symmetry::SymShakeStructureMover:

Collaboration diagram for protocols::simple_moves::symmetry::SymShakeStructureMover:

List of all members.

Public Member Functions
	SymShakeStructureMover ()
	SymShakeStructureMover (core::scoring::ScoreFunctionOP s)
	SymShakeStructureMover (core::scoring::ScoreFunctionOP s, core::Real temperature)
	SymShakeStructureMover (core::scoring::ScoreFunctionOP s, core::Real ens_diversity, core::Real ens_div_tolerance)
virtual	~SymShakeStructureMover ()
virtual std::string	get_name () const
	Each derived class must specify its name. The class name.
core::scoring::symmetry::SymmetricScoreFunction	reduce_fa_rep (float fraction_fa_rep, core::scoring::ScoreFunction &s)
void	minimize_with_constraints (core::pose::Pose &p, core::scoring::ScoreFunction &s)
void	setup_for_run (core::pose::Pose &p)
void	run_mc (core::pose::Pose &p, core::scoring::ScoreFunction &s, core::Real temperature)

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Constructor & Destructor Documentation

protocols::simple_moves::symmetry::SymShakeStructureMover::SymShakeStructureMover

(

)

protocols::simple_moves::symmetry::SymShakeStructureMover::SymShakeStructureMover

(

core::scoring::ScoreFunctionOP

s

)

protocols::simple_moves::symmetry::SymShakeStructureMover::SymShakeStructureMover	(	core::scoring::ScoreFunctionOP	s,
		core::Real	temperature
	)

protocols::simple_moves::symmetry::SymShakeStructureMover::SymShakeStructureMover	(	core::scoring::ScoreFunctionOP	s,
		core::Real	ens_diversity,
		core::Real	ens_div_tolerance
	)

protocols::simple_moves::symmetry::SymShakeStructureMover::~SymShakeStructureMover

(

)

[virtual]

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Member Function Documentation

std::string protocols::simple_moves::symmetry::SymShakeStructureMover::get_name

(

)

const [virtual]

Each derived class must specify its name. The class name.

Reimplemented from protocols::simple_moves::ShakeStructureMover.

void protocols::simple_moves::symmetry::SymShakeStructureMover::minimize_with_constraints	(	core::pose::Pose &	p,
		core::scoring::ScoreFunction &	s
	)		[virtual]

Reimplemented from protocols::simple_moves::ShakeStructureMover.

References protocols::simple_moves::ShakeStructureMover::get_ramp_fa_rep(), protocols::simple_moves::ShakeStructureMover::get_sc_min(), core::pose::symmetry::make_symmetric_movemap(), core::optimization::MinimizerOptions::nblist_auto_update(), reduce_fa_rep(), and core::optimization::symmetry::SymAtomTreeMinimizer::run().

Referenced by run_mc().

core::scoring::symmetry::SymmetricScoreFunction protocols::simple_moves::symmetry::SymShakeStructureMover::reduce_fa_rep	(	float	fraction_fa_rep,
		core::scoring::ScoreFunction &	s
	)

Reimplemented from protocols::simple_moves::ShakeStructureMover.

References core::scoring::ScoreFunction::get_weight(), core::scoring::score_type_from_name(), and core::scoring::ScoreFunction::set_weight().

Referenced by minimize_with_constraints().

void protocols::simple_moves::symmetry::SymShakeStructureMover::run_mc	(	core::pose::Pose &	p,
		core::scoring::ScoreFunction &	s,
		core::Real	temperature
	)		[virtual]

Reimplemented from protocols::simple_moves::ShakeStructureMover.

References core::pose::Pose::constraint_set(), protocols::simple_moves::ShakeStructureMover::get_min_cst(), protocols::simple_moves::ShakeStructureMover::get_min_scorefunction(), protocols::simple_moves::ShakeStructureMover::get_nrounds(), protocols::simple_moves::ShakeStructureMover::get_skip_low_temp_phase(), protocols::simple_moves::ShakeStructureMover::get_testing_phase(), core::init(), core::pose::symmetry::make_symmetric_movemap(), minimize_with_constraints(), core::pose::Pose::remove_constraints(), protocols::simple_moves::ShakeStructureMover::setup_ca_constraints(), protocols::simple_moves::ShakeStructureMover::setup_movers(), and core::pose::Pose::total_residue().

void protocols::simple_moves::symmetry::SymShakeStructureMover::setup_for_run

(

core::pose::Pose &

p

)

[virtual]

Reimplemented from protocols::simple_moves::ShakeStructureMover.

References core::scoring::ScoreFunctionFactory::create_score_function(), protocols::simple_moves::ShakeStructureMover::get_ensemble_ca_rmsd(), protocols::simple_moves::ShakeStructureMover::get_harmonic_ca_cst_std_dev(), protocols::simple_moves::ShakeStructureMover::get_mc_temperature(), protocols::simple_moves::ShakeStructureMover::get_min_cst(), protocols::simple_moves::ShakeStructureMover::get_sc_min(), protocols::simple_moves::ShakeStructureMover::get_scorefunction(), protocols::simple_moves::ShakeStructureMover::get_scorefunction_initialized(), core::scoring::score_type_from_name(), protocols::simple_moves::ShakeStructureMover::set_is_properly_initialized(), protocols::simple_moves::ShakeStructureMover::set_mc_temp(), protocols::simple_moves::ShakeStructureMover::set_min_scorefunction(), protocols::simple_moves::ShakeStructureMover::set_scorefunction(), protocols::simple_moves::ShakeStructureMover::set_temp_based_on_ens_diversity(), protocols::simple_moves::ShakeStructureMover::set_testing_phase(), and protocols::simple_moves::ShakeStructureMover::setup_ca_constraints().

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The documentation for this class was generated from the following files:

• src/protocols/simple_moves/symmetry/SymShakeStructureMover.hh
• src/protocols/simple_moves/symmetry/SymShakeStructureMover.cc