Rosetta 3.4
Public Types | Public Member Functions
protocols::protein_interface_design::movers::HotspotDisjointedFoldTreeMover Class Reference

#include <HotspotDisjointedFoldTreeMover.hh>

Inheritance diagram for protocols::protein_interface_design::movers::HotspotDisjointedFoldTreeMover:
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Collaboration diagram for protocols::protein_interface_design::movers::HotspotDisjointedFoldTreeMover:
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List of all members.

Public Types

typedef core::pose::Pose Pose

Public Member Functions

 HotspotDisjointedFoldTreeMover ()
void apply (core::pose::Pose &pose)
virtual std::string get_name () const
 Each derived class must specify its name. The class name.
void parse_my_tag (utility::tag::TagPtr const tag, protocols::moves::DataMap &, protocols::filters::Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &)
 Called by MoverFactory when constructing new Movers. Takes care of the specific mover's parsing.
protocols::moves::MoverOP clone () const
 clone has to be overridden only if clone invocation is expected.
protocols::moves::MoverOP fresh_instance () const
 this is like clone(), except it generates a new mover object freshly created with the default ctor. This function _should_ be pure virtual but that would disrupt the code base; MAKE SURE YOU DEFINE IT if you want to have your mover be a protocol handed to the job distributor (august 08 vintage).
virtual ~HotspotDisjointedFoldTreeMover ()
void add_residue (core::Size const r)
std::set< core::Sizeget_residues () const
void chain (core::Size const c)
core::Size chain () const
core::Real ddG_threshold () const
void ddG_threshold (core::Real const )
core::scoring::ScoreFunctionOP scorefxn () const
void scorefxn (core::scoring::ScoreFunctionOP scorefxn)
void interface_radius (core::Real const rad)
core::Real interface_radius () const
core::kinematics::FoldTreeOP make_disjointed_foldtree (core::pose::Pose const &pose) const

Member Typedef Documentation

Reimplemented from protocols::moves::Mover.


Constructor & Destructor Documentation

protocols::protein_interface_design::movers::HotspotDisjointedFoldTreeMover::HotspotDisjointedFoldTreeMover ( )

Referenced by clone().

protocols::protein_interface_design::movers::HotspotDisjointedFoldTreeMover::~HotspotDisjointedFoldTreeMover ( ) [virtual]

Member Function Documentation

void protocols::protein_interface_design::movers::HotspotDisjointedFoldTreeMover::add_residue ( core::Size const  r)

Referenced by apply(), and parse_my_tag().

void protocols::protein_interface_design::movers::HotspotDisjointedFoldTreeMover::apply ( core::pose::Pose pose) [virtual]
void protocols::protein_interface_design::movers::HotspotDisjointedFoldTreeMover::chain ( core::Size const  c)
core::Size protocols::protein_interface_design::movers::HotspotDisjointedFoldTreeMover::chain ( ) const
protocols::moves::MoverOP protocols::protein_interface_design::movers::HotspotDisjointedFoldTreeMover::clone ( ) const [virtual]

clone has to be overridden only if clone invocation is expected.

clone is meant to return an OP'ed deep copy of this object. This really should be a pure virtual in the base class, but adding pure virtuals to Mover would massively disrupt the code. This default implementation crashes at runtime instead of compiletime if you try to call it. If this code is causing you problems, your Mover needs to override this function.

Reimplemented from protocols::moves::Mover.

References HotspotDisjointedFoldTreeMover().

core::Real protocols::protein_interface_design::movers::HotspotDisjointedFoldTreeMover::ddG_threshold ( ) const

Referenced by apply(), and parse_my_tag().

void protocols::protein_interface_design::movers::HotspotDisjointedFoldTreeMover::ddG_threshold ( core::Real const  d)
protocols::moves::MoverOP protocols::protein_interface_design::movers::HotspotDisjointedFoldTreeMover::fresh_instance ( ) const [inline, virtual]

this is like clone(), except it generates a new mover object freshly created with the default ctor. This function _should_ be pure virtual but that would disrupt the code base; MAKE SURE YOU DEFINE IT if you want to have your mover be a protocol handed to the job distributor (august 08 vintage).

fresh_instance is meant to return a new object of this class, created with the default constructor. This really should be a pure virtual in the base class, but adding pure virtuals to Mover would massively disrupt the code. This default implementation crashes at runtime instead of compiletime if you try to call it. If this code is causing you problems, your Mover needs to override this function. This is used by the August 08 job distributor.

Reimplemented from protocols::moves::Mover.

std::string protocols::protein_interface_design::movers::HotspotDisjointedFoldTreeMover::get_name ( ) const [virtual]

Each derived class must specify its name. The class name.

Implements protocols::moves::Mover.

References protocols::protein_interface_design::movers::HotspotDisjointedFoldTreeMoverCreator::mover_name().

std::set< core::Size > protocols::protein_interface_design::movers::HotspotDisjointedFoldTreeMover::get_residues ( ) const
core::Real protocols::protein_interface_design::movers::HotspotDisjointedFoldTreeMover::interface_radius ( ) const

Referenced by apply(), and parse_my_tag().

void protocols::protein_interface_design::movers::HotspotDisjointedFoldTreeMover::interface_radius ( core::Real const  rad)
core::kinematics::FoldTreeOP protocols::protein_interface_design::movers::HotspotDisjointedFoldTreeMover::make_disjointed_foldtree ( core::pose::Pose const &  pose) const
void protocols::protein_interface_design::movers::HotspotDisjointedFoldTreeMover::parse_my_tag ( utility::tag::TagPtr const  tag,
protocols::moves::DataMap data,
protocols::filters::Filters_map const &  filters,
protocols::moves::Movers_map const &  movers,
core::pose::Pose const &  pose 
) [virtual]

Called by MoverFactory when constructing new Movers. Takes care of the specific mover's parsing.

Some movers need not be parsed, so we shouldn't stop executions. This, however, calls attention to the lack of this method, which could be due to something as silly as a wrong parameters definition.

Reimplemented from protocols::moves::Mover.

References add_residue(), chain(), ddG_threshold(), protocols::moves::DataMap::get(), get_residues(), protocols::rosetta_scripts::get_resnum_list(), interface_radius(), and scorefxn().

core::scoring::ScoreFunctionOP protocols::protein_interface_design::movers::HotspotDisjointedFoldTreeMover::scorefxn ( ) const

Referenced by apply(), parse_my_tag(), and scorefxn().

void protocols::protein_interface_design::movers::HotspotDisjointedFoldTreeMover::scorefxn ( core::scoring::ScoreFunctionOP  scorefxn)

References scorefxn().


The documentation for this class was generated from the following files:
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