, including all inherited members.
| atomic_interaction_cutoff() const | core::scoring::methods::WholeStructureEnergy | [inline, virtual] |
| CA_search_scores_and_tensors(utility::vector1< core::Real > &vec_best_score, utility::vector1< PcsTensor > &vec_best_tensor, numeric::xyzVector< core::Real > &best_coo, core::pose::Pose const &pdb, PcsDataCenter &pcs_d, core::Size i_multi_data, GridSearchIteratorCA &grid_it) const | protocols::scoring::methods::pcs2::PcsEnergy | |
| CA_search_scores_and_tensors_with_svd(utility::vector1< core::Real > &vec_best_score, utility::vector1< PcsTensor > &vec_best_tensor, numeric::xyzVector< core::Real > &best_coo, core::pose::Pose const &, PcsDataCenter &pcs_d_c, core::Size, GridSearchIteratorCA &grid_it) const | protocols::scoring::methods::pcs2::PcsEnergy | |
| calculate_pcs_score_on_PCS_data_center_CA(core::pose::Pose &pose, bool print_to_tracer, PcsDataCenter &pcs_d, core::Size i_multi_data, GridSearchIteratorCA &grid_it) const | protocols::scoring::methods::pcs2::PcsEnergy | |
| clone() const | protocols::scoring::methods::pcs2::PcsEnergy | [virtual] |
| defines_high_order_terms(pose::Pose const &) const | core::scoring::methods::EnergyMethod | [virtual] |
| dump_PCS_info(utility::vector1< PcsTensor > const &vec_tensor, numeric::xyzVector< core::Real > const &best_coo, PcsDataCenter const &pcs_d) const | protocols::scoring::methods::pcs2::PcsEnergy | |
| EnergyMethod(EnergyMethodCreatorOP creator) | core::scoring::methods::EnergyMethod | |
| EnergyMethod(EnergyMethod const &src) | core::scoring::methods::EnergyMethod | |
| eval_atom_derivative(id::AtomID const &id, pose::Pose const &pose, kinematics::DomainMap const &domain_map, ScoreFunction const &sfxn, EnergyMap const &emap, Vector &F1, Vector &F2) const | core::scoring::methods::EnergyMethod | [virtual] |
| finalize_after_derivatives(pose::Pose &, ScoreFunction const &) const | core::scoring::methods::EnergyMethod | [virtual] |
| finalize_total_energy(core::pose::Pose &pose, core::scoring::ScoreFunction const &, core::scoring::EnergyMap &totals) const | protocols::scoring::methods::pcs2::PcsEnergy | [virtual] |
| indicate_required_context_graphs(utility::vector1< bool > &) const | protocols::scoring::methods::pcs2::PcsEnergy | [virtual] |
| method_type() const | core::scoring::methods::WholeStructureEnergy | [virtual] |
| minimize_in_whole_structure_context(pose::Pose const &) const | core::scoring::methods::EnergyMethod | [virtual] |
| minimize_tensors_fix_from_PCS_data(utility::vector1< PcsTensor > &vec_best_tensor, PcsDataCenter const &pcs_d) const | protocols::scoring::methods::pcs2::PcsEnergy | |
| minimize_tensors_from_PCS_data(utility::vector1< PcsTensor > &vec_best_tensor, numeric::xyzVector< core::Real > &best_coo, PcsDataCenter const &pcs_d, core::optimization::Minimizer &minimizer, utility::vector1< core::Real > &vect_to_opti) const | protocols::scoring::methods::pcs2::PcsEnergy | |
| minimize_tensors_from_PCS_data_with_svd(utility::vector1< PcsTensor > &vec_best_tensor, numeric::xyzVector< core::Real > &best_coo, PcsDataCenter const &, core::optimization::Minimizer &minimizer, utility::vector1< core::Real > &vect_to_opti) const | protocols::scoring::methods::pcs2::PcsEnergy | |
| operator=(PcsEnergy const &other) | protocols::scoring::methods::pcs2::PcsEnergy | |
| parent typedef | protocols::scoring::methods::pcs2::PcsEnergy | |
| PCS_multi_data_from_noone() const | protocols::scoring::methods::pcs2::PcsEnergy | |
| PCS_multi_data_from_pose(core::pose::Pose &pose) const | protocols::scoring::methods::pcs2::PcsEnergy | |
| PcsEnergy() | protocols::scoring::methods::pcs2::PcsEnergy | |
| PcsEnergy(PcsEnergy const &other) | protocols::scoring::methods::pcs2::PcsEnergy | |
| prepare_rotamers_for_packing(pose::Pose const &, conformation::RotamerSetBase &) const | core::scoring::methods::EnergyMethod | [virtual] |
| score_types() const | core::scoring::methods::EnergyMethod | [inline] |
| set_score_types(EnergyMethodCreatorOP creator) | core::scoring::methods::EnergyMethod | [protected] |
| setup_for_derivatives(pose::Pose &pose, ScoreFunction const &sfxn) const | core::scoring::methods::EnergyMethod | [virtual] |
| setup_for_minimizing(pose::Pose &, ScoreFunction const &, kinematics::MinimizerMapBase const &) const | core::scoring::methods::EnergyMethod | [virtual] |
| setup_for_packing(pose::Pose &, utility::vector1< bool > const &, utility::vector1< bool > const &) const | core::scoring::methods::EnergyMethod | [virtual] |
| setup_for_scoring(pose::Pose &, ScoreFunction const &) const | core::scoring::methods::EnergyMethod | [virtual] |
| update_residue_for_packing(pose::Pose &, Size resid) const | core::scoring::methods::EnergyMethod | [virtual] |
| version() const | protocols::scoring::methods::pcs2::PcsEnergy | [virtual] |
| WholeStructureEnergy(EnergyMethodCreatorOP) | core::scoring::methods::WholeStructureEnergy | |
| ~EnergyMethod() | core::scoring::methods::EnergyMethod | [virtual] |
| ~PcsEnergy() | protocols::scoring::methods::pcs2::PcsEnergy | |
| ~WholeStructureEnergy() | core::scoring::methods::WholeStructureEnergy | [inline, virtual] |
1.7.4
