Rosetta 3.4
protocols::scoring::methods::pcs2::PcsEnergy Member List
This is the complete list of members for protocols::scoring::methods::pcs2::PcsEnergy, including all inherited members.
atomic_interaction_cutoff() const core::scoring::methods::WholeStructureEnergy [inline, virtual]
CA_search_scores_and_tensors(utility::vector1< core::Real > &vec_best_score, utility::vector1< PcsTensor > &vec_best_tensor, numeric::xyzVector< core::Real > &best_coo, core::pose::Pose const &pdb, PcsDataCenter &pcs_d, core::Size i_multi_data, GridSearchIteratorCA &grid_it) const protocols::scoring::methods::pcs2::PcsEnergy
CA_search_scores_and_tensors_with_svd(utility::vector1< core::Real > &vec_best_score, utility::vector1< PcsTensor > &vec_best_tensor, numeric::xyzVector< core::Real > &best_coo, core::pose::Pose const &, PcsDataCenter &pcs_d_c, core::Size, GridSearchIteratorCA &grid_it) const protocols::scoring::methods::pcs2::PcsEnergy
calculate_pcs_score_on_PCS_data_center_CA(core::pose::Pose &pose, bool print_to_tracer, PcsDataCenter &pcs_d, core::Size i_multi_data, GridSearchIteratorCA &grid_it) const protocols::scoring::methods::pcs2::PcsEnergy
clone() const protocols::scoring::methods::pcs2::PcsEnergy [virtual]
defines_high_order_terms(pose::Pose const &) const core::scoring::methods::EnergyMethod [virtual]
dump_PCS_info(utility::vector1< PcsTensor > const &vec_tensor, numeric::xyzVector< core::Real > const &best_coo, PcsDataCenter const &pcs_d) const protocols::scoring::methods::pcs2::PcsEnergy
EnergyMethod(EnergyMethodCreatorOP creator)core::scoring::methods::EnergyMethod
EnergyMethod(EnergyMethod const &src)core::scoring::methods::EnergyMethod
eval_atom_derivative(id::AtomID const &id, pose::Pose const &pose, kinematics::DomainMap const &domain_map, ScoreFunction const &sfxn, EnergyMap const &emap, Vector &F1, Vector &F2) const core::scoring::methods::EnergyMethod [virtual]
finalize_after_derivatives(pose::Pose &, ScoreFunction const &) const core::scoring::methods::EnergyMethod [virtual]
finalize_total_energy(core::pose::Pose &pose, core::scoring::ScoreFunction const &, core::scoring::EnergyMap &totals) const protocols::scoring::methods::pcs2::PcsEnergy [virtual]
indicate_required_context_graphs(utility::vector1< bool > &) const protocols::scoring::methods::pcs2::PcsEnergy [virtual]
method_type() const core::scoring::methods::WholeStructureEnergy [virtual]
minimize_in_whole_structure_context(pose::Pose const &) const core::scoring::methods::EnergyMethod [virtual]
minimize_tensors_fix_from_PCS_data(utility::vector1< PcsTensor > &vec_best_tensor, PcsDataCenter const &pcs_d) const protocols::scoring::methods::pcs2::PcsEnergy
minimize_tensors_from_PCS_data(utility::vector1< PcsTensor > &vec_best_tensor, numeric::xyzVector< core::Real > &best_coo, PcsDataCenter const &pcs_d, core::optimization::Minimizer &minimizer, utility::vector1< core::Real > &vect_to_opti) const protocols::scoring::methods::pcs2::PcsEnergy
minimize_tensors_from_PCS_data_with_svd(utility::vector1< PcsTensor > &vec_best_tensor, numeric::xyzVector< core::Real > &best_coo, PcsDataCenter const &, core::optimization::Minimizer &minimizer, utility::vector1< core::Real > &vect_to_opti) const protocols::scoring::methods::pcs2::PcsEnergy
operator=(PcsEnergy const &other)protocols::scoring::methods::pcs2::PcsEnergy
parent typedefprotocols::scoring::methods::pcs2::PcsEnergy
PCS_multi_data_from_noone() const protocols::scoring::methods::pcs2::PcsEnergy
PCS_multi_data_from_pose(core::pose::Pose &pose) const protocols::scoring::methods::pcs2::PcsEnergy
PcsEnergy()protocols::scoring::methods::pcs2::PcsEnergy
PcsEnergy(PcsEnergy const &other)protocols::scoring::methods::pcs2::PcsEnergy
prepare_rotamers_for_packing(pose::Pose const &, conformation::RotamerSetBase &) const core::scoring::methods::EnergyMethod [virtual]
score_types() const core::scoring::methods::EnergyMethod [inline]
set_score_types(EnergyMethodCreatorOP creator)core::scoring::methods::EnergyMethod [protected]
setup_for_derivatives(pose::Pose &pose, ScoreFunction const &sfxn) const core::scoring::methods::EnergyMethod [virtual]
setup_for_minimizing(pose::Pose &, ScoreFunction const &, kinematics::MinimizerMapBase const &) const core::scoring::methods::EnergyMethod [virtual]
setup_for_packing(pose::Pose &, utility::vector1< bool > const &, utility::vector1< bool > const &) const core::scoring::methods::EnergyMethod [virtual]
setup_for_scoring(pose::Pose &, ScoreFunction const &) const core::scoring::methods::EnergyMethod [virtual]
update_residue_for_packing(pose::Pose &, Size resid) const core::scoring::methods::EnergyMethod [virtual]
version() const protocols::scoring::methods::pcs2::PcsEnergy [virtual]
WholeStructureEnergy(EnergyMethodCreatorOP)core::scoring::methods::WholeStructureEnergy
~EnergyMethod()core::scoring::methods::EnergyMethod [virtual]
~PcsEnergy()protocols::scoring::methods::pcs2::PcsEnergy
~WholeStructureEnergy()core::scoring::methods::WholeStructureEnergy [inline, virtual]
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