Rosetta 3.4
Public Types | Public Member Functions
protocols::fldsgn::potentials::sspot::NatbiasHelixPairPotential Class Reference

#include <NatbiasHelixPairPotential.hh>

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List of all members.

Public Types

typedef core::Size Size
typedef core::Real Real
typedef core::Vector Vector
typedef core::pose::Pose Pose
typedef
protocols::fldsgn::topology::SS_Info2 
SS_Info2
typedef
protocols::fldsgn::topology::SS_Info2_OP 
SS_Info2_OP
typedef
protocols::fldsgn::topology::SS_Info2_COP 
SS_Info2_COP
typedef
protocols::fldsgn::topology::HelixPairing 
HelixPairing
typedef
protocols::fldsgn::topology::HelixPairings 
HelixPairings
typedef
protocols::fldsgn::topology::HelixPairingSetOP 
HelixPairingSetOP

Public Member Functions

 NatbiasHelixPairPotential ()
 default constructor
 NatbiasHelixPairPotential (HelixPairingSetOP const hpairset)
 value constructor
 NatbiasHelixPairPotential (NatbiasHelixPairPotential const &src)
 copy constructor
 ~NatbiasHelixPairPotential ()
 default destructor
void set_params ()
 set parmeters
void set_hpairset (HelixPairingSetOP const hpairset)
 set HelixPairingSet
void set_params_distance_pot (Real w, Real d, Real s)
 set parameters for distance score between mid points of helices
void set_params_angle_pot (Real w, Real d, Real s)
 set parameters for angle score of helix pair
void set_dist_wts (Real const r)
void set_dist (Real const r)
 set distance parmeter
void set_dist_sigma2 (Real const r)
void set_angle_wts (Real const r)
void set_angle (Real const r)
void set_angle_sigma2 (Real const r)
void set_bendangle (Real r)
 set bend angle
void show (Pose const &pose) const
void show_params () const
 show parameters
void score (SS_Info2_COP const ss_info, Real &hh_score) const
 score secondary structure

Member Typedef Documentation


Constructor & Destructor Documentation

protocols::fldsgn::potentials::sspot::NatbiasHelixPairPotential::NatbiasHelixPairPotential ( )

default constructor

default constructor

References set_params().

protocols::fldsgn::potentials::sspot::NatbiasHelixPairPotential::NatbiasHelixPairPotential ( HelixPairingSetOP const  hpairset)

value constructor

References set_params().

protocols::fldsgn::potentials::sspot::NatbiasHelixPairPotential::NatbiasHelixPairPotential ( NatbiasHelixPairPotential const &  src)

copy constructor

protocols::fldsgn::potentials::sspot::NatbiasHelixPairPotential::~NatbiasHelixPairPotential ( )

default destructor


Member Function Documentation

void protocols::fldsgn::potentials::sspot::NatbiasHelixPairPotential::score ( SS_Info2_COP const  ss_info,
Real hh_score 
) const
void protocols::fldsgn::potentials::sspot::NatbiasHelixPairPotential::set_angle ( Real const  r) [inline]
void protocols::fldsgn::potentials::sspot::NatbiasHelixPairPotential::set_angle_sigma2 ( Real const  r) [inline]
void protocols::fldsgn::potentials::sspot::NatbiasHelixPairPotential::set_angle_wts ( Real const  r) [inline]
void protocols::fldsgn::potentials::sspot::NatbiasHelixPairPotential::set_bendangle ( Real  r) [inline]

set bend angle

void protocols::fldsgn::potentials::sspot::NatbiasHelixPairPotential::set_dist ( Real const  r) [inline]

set distance parmeter

void protocols::fldsgn::potentials::sspot::NatbiasHelixPairPotential::set_dist_sigma2 ( Real const  r) [inline]
void protocols::fldsgn::potentials::sspot::NatbiasHelixPairPotential::set_dist_wts ( Real const  r) [inline]
void protocols::fldsgn::potentials::sspot::NatbiasHelixPairPotential::set_hpairset ( HelixPairingSetOP const  hpairset)

set HelixPairingSet

void protocols::fldsgn::potentials::sspot::NatbiasHelixPairPotential::set_params ( )

set parmeters

Referenced by NatbiasHelixPairPotential().

void protocols::fldsgn::potentials::sspot::NatbiasHelixPairPotential::set_params_angle_pot ( Real  w,
Real  d,
Real  s 
)

set parameters for angle score of helix pair

References make_table_of_pilot_apps::d.

void protocols::fldsgn::potentials::sspot::NatbiasHelixPairPotential::set_params_distance_pot ( Real  w,
Real  d,
Real  s 
)

set parameters for distance score between mid points of helices

References make_table_of_pilot_apps::d.

void protocols::fldsgn::potentials::sspot::NatbiasHelixPairPotential::show ( Pose const &  pose) const
void protocols::fldsgn::potentials::sspot::NatbiasHelixPairPotential::show_params ( ) const

show parameters

References protocols::fldsgn::potentials::TR().


The documentation for this class was generated from the following files:
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