Rosetta 3.4
Public Member Functions
core::scoring::rna::RNA_FilteredBaseBaseInfo Class Reference

Keep track of RNA centroid information inside the pose. More...

#include <RNA_FilteredBaseBaseInfo.hh>

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List of all members.

Public Member Functions

 RNA_FilteredBaseBaseInfo ()
 RNA_FilteredBaseBaseInfo (RNA_FilteredBaseBaseInfo const &src)
basic::datacache::CacheableDataOP clone () const
Size size () const
void resize (Size const &total_residue)
bool calculated () const
boolcalculated ()
void set_calculated (bool const &setting)
void carry_out_filtering (RNA_RawBaseBaseInfo const &raw_base_base_info)
ObjexxFCL::FArray2D< Real > & filtered_base_pair_array ()
ObjexxFCL::FArray2D< Real > & filtered_base_axis_array ()
ObjexxFCL::FArray2D< Real > & filtered_base_stagger_array ()
ObjexxFCL::FArray2D< Real > & filtered_base_stack_array ()
ObjexxFCL::FArray2D< Real > & filtered_base_stack_axis_array ()
ObjexxFCL::FArray2D< Real > const & filtered_base_pair_array () const
ObjexxFCL::FArray2D< Real > const & filtered_base_axis_array () const
ObjexxFCL::FArray2D< Real > const & filtered_base_stagger_array () const
ObjexxFCL::FArray2D< Real > const & filtered_base_stack_array () const
ObjexxFCL::FArray2D< Real > const & filtered_base_stack_axis_array () const
Real const & get_total_base_pair_score () const
Real const & get_total_base_axis_score () const
Real const & get_total_base_stagger_score () const
Real const & get_total_base_stack_score () const
Real const & get_total_base_stack_axis_score () const
bool const & scale_axis_stagger () const
Real const & basepair_axis_stagger_scaling () const
Real const & basestack_axis_scaling () const
Energy_base_pair_list const scored_base_pair_list () const
Energy_base_stack_list const scored_base_stack_list () const
Real get_data_score (RNA_DataInfo const &rna_data_info) const

Detailed Description

Keep track of RNA centroid information inside the pose.


Constructor & Destructor Documentation

core::scoring::rna::RNA_FilteredBaseBaseInfo::RNA_FilteredBaseBaseInfo ( )

Referenced by clone().

core::scoring::rna::RNA_FilteredBaseBaseInfo::RNA_FilteredBaseBaseInfo ( RNA_FilteredBaseBaseInfo const &  src)

Copy constructors must copy all data, not just some...


Member Function Documentation

Real const& core::scoring::rna::RNA_FilteredBaseBaseInfo::basepair_axis_stagger_scaling ( ) const [inline]
Real const& core::scoring::rna::RNA_FilteredBaseBaseInfo::basestack_axis_scaling ( ) const [inline]
bool& core::scoring::rna::RNA_FilteredBaseBaseInfo::calculated ( ) [inline]
bool core::scoring::rna::RNA_FilteredBaseBaseInfo::calculated ( ) const [inline]
void core::scoring::rna::RNA_FilteredBaseBaseInfo::carry_out_filtering ( RNA_RawBaseBaseInfo const &  raw_base_base_info)
basic::datacache::CacheableDataOP core::scoring::rna::RNA_FilteredBaseBaseInfo::clone ( ) const [inline]
ObjexxFCL::FArray2D< Real >& core::scoring::rna::RNA_FilteredBaseBaseInfo::filtered_base_axis_array ( ) [inline]
ObjexxFCL::FArray2D< Real > const& core::scoring::rna::RNA_FilteredBaseBaseInfo::filtered_base_axis_array ( ) const [inline]
ObjexxFCL::FArray2D< Real >& core::scoring::rna::RNA_FilteredBaseBaseInfo::filtered_base_pair_array ( ) [inline]
ObjexxFCL::FArray2D< Real > const& core::scoring::rna::RNA_FilteredBaseBaseInfo::filtered_base_pair_array ( ) const [inline]
ObjexxFCL::FArray2D< Real > const& core::scoring::rna::RNA_FilteredBaseBaseInfo::filtered_base_stack_array ( ) const [inline]
ObjexxFCL::FArray2D< Real >& core::scoring::rna::RNA_FilteredBaseBaseInfo::filtered_base_stack_array ( ) [inline]
ObjexxFCL::FArray2D< Real > const& core::scoring::rna::RNA_FilteredBaseBaseInfo::filtered_base_stack_axis_array ( ) const [inline]
ObjexxFCL::FArray2D< Real >& core::scoring::rna::RNA_FilteredBaseBaseInfo::filtered_base_stack_axis_array ( ) [inline]
ObjexxFCL::FArray2D< Real >& core::scoring::rna::RNA_FilteredBaseBaseInfo::filtered_base_stagger_array ( ) [inline]
ObjexxFCL::FArray2D< Real > const& core::scoring::rna::RNA_FilteredBaseBaseInfo::filtered_base_stagger_array ( ) const [inline]
Real core::scoring::rna::RNA_FilteredBaseBaseInfo::get_data_score ( RNA_DataInfo const &  rna_data_info) const
Real const& core::scoring::rna::RNA_FilteredBaseBaseInfo::get_total_base_axis_score ( ) const [inline]
Real const& core::scoring::rna::RNA_FilteredBaseBaseInfo::get_total_base_pair_score ( ) const [inline]
Real const& core::scoring::rna::RNA_FilteredBaseBaseInfo::get_total_base_stack_axis_score ( ) const [inline]
Real const& core::scoring::rna::RNA_FilteredBaseBaseInfo::get_total_base_stack_score ( ) const [inline]
Real const& core::scoring::rna::RNA_FilteredBaseBaseInfo::get_total_base_stagger_score ( ) const [inline]
void core::scoring::rna::RNA_FilteredBaseBaseInfo::resize ( Size const &  total_residue)

Referenced by carry_out_filtering().

bool const& core::scoring::rna::RNA_FilteredBaseBaseInfo::scale_axis_stagger ( ) const [inline]
Energy_base_pair_list const core::scoring::rna::RNA_FilteredBaseBaseInfo::scored_base_pair_list ( ) const [inline]
Energy_base_stack_list const core::scoring::rna::RNA_FilteredBaseBaseInfo::scored_base_stack_list ( ) const [inline]
void core::scoring::rna::RNA_FilteredBaseBaseInfo::set_calculated ( bool const &  setting) [inline]

Referenced by carry_out_filtering().

Size core::scoring::rna::RNA_FilteredBaseBaseInfo::size ( ) const [inline]

The documentation for this class was generated from the following files:
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