core::scoring::rna::RNA_FilteredBaseBaseInfo Class Reference

Keep track of RNA centroid information inside the pose. More...

#include <RNA_FilteredBaseBaseInfo.hh>

Inheritance diagram for core::scoring::rna::RNA_FilteredBaseBaseInfo:

Collaboration diagram for core::scoring::rna::RNA_FilteredBaseBaseInfo:

List of all members.

Public Member Functions
	RNA_FilteredBaseBaseInfo ()
	RNA_FilteredBaseBaseInfo (RNA_FilteredBaseBaseInfo const &src)
basic::datacache::CacheableDataOP	clone () const
Size	size () const
void	resize (Size const &total_residue)
bool	calculated () const
bool &	calculated ()
void	set_calculated (bool const &setting)
void	carry_out_filtering (RNA_RawBaseBaseInfo const &raw_base_base_info)
ObjexxFCL::FArray2D< Real > &	filtered_base_pair_array ()
ObjexxFCL::FArray2D< Real > &	filtered_base_axis_array ()
ObjexxFCL::FArray2D< Real > &	filtered_base_stagger_array ()
ObjexxFCL::FArray2D< Real > &	filtered_base_stack_array ()
ObjexxFCL::FArray2D< Real > &	filtered_base_stack_axis_array ()
ObjexxFCL::FArray2D< Real > const &	filtered_base_pair_array () const
ObjexxFCL::FArray2D< Real > const &	filtered_base_axis_array () const
ObjexxFCL::FArray2D< Real > const &	filtered_base_stagger_array () const
ObjexxFCL::FArray2D< Real > const &	filtered_base_stack_array () const
ObjexxFCL::FArray2D< Real > const &	filtered_base_stack_axis_array () const
Real const &	get_total_base_pair_score () const
Real const &	get_total_base_axis_score () const
Real const &	get_total_base_stagger_score () const
Real const &	get_total_base_stack_score () const
Real const &	get_total_base_stack_axis_score () const
bool const &	scale_axis_stagger () const
Real const &	basepair_axis_stagger_scaling () const
Real const &	basestack_axis_scaling () const
Energy_base_pair_list const	scored_base_pair_list () const
Energy_base_stack_list const	scored_base_stack_list () const
Real	get_data_score (RNA_DataInfo const &rna_data_info) const

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Detailed Description

Keep track of RNA centroid information inside the pose.

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Constructor & Destructor Documentation

core::scoring::rna::RNA_FilteredBaseBaseInfo::RNA_FilteredBaseBaseInfo

(

)

Referenced by clone().

core::scoring::rna::RNA_FilteredBaseBaseInfo::RNA_FilteredBaseBaseInfo

(

RNA_FilteredBaseBaseInfo const &

src

)

Copy constructors must copy all data, not just some...

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Member Function Documentation

Real const& core::scoring::rna::RNA_FilteredBaseBaseInfo::basepair_axis_stagger_scaling

(

)

const [inline]

Real const& core::scoring::rna::RNA_FilteredBaseBaseInfo::basestack_axis_scaling

(

)

const [inline]

bool& core::scoring::rna::RNA_FilteredBaseBaseInfo::calculated

(

)

[inline]

bool core::scoring::rna::RNA_FilteredBaseBaseInfo::calculated

(

)

const [inline]

Referenced by core::scoring::rna::RNA_ScoringInfo::calculated().

void core::scoring::rna::RNA_FilteredBaseBaseInfo::carry_out_filtering

(

RNA_RawBaseBaseInfo const &

raw_base_base_info

)

References resize(), set_calculated(), and core::scoring::rna::RNA_RawBaseBaseInfo::size().

Referenced by core::scoring::rna::RNA_PairwiseLowResolutionEnergy::finalize_total_energy(), core::scoring::rna::RNA_BaseBaseEnergy::finalize_total_energy(), core::scoring::rna::RNA_BaseBaseEnergy::setup_for_derivatives(), and core::scoring::rna::RNA_LowResolutionPotential::update_rna_base_pair_list().

basic::datacache::CacheableDataOP core::scoring::rna::RNA_FilteredBaseBaseInfo::clone

(

)

const [inline]

References RNA_FilteredBaseBaseInfo().

ObjexxFCL::FArray2D< Real >& core::scoring::rna::RNA_FilteredBaseBaseInfo::filtered_base_axis_array

(

)

[inline]

ObjexxFCL::FArray2D< Real > const& core::scoring::rna::RNA_FilteredBaseBaseInfo::filtered_base_axis_array

(

)

const [inline]

ObjexxFCL::FArray2D< Real >& core::scoring::rna::RNA_FilteredBaseBaseInfo::filtered_base_pair_array

(

)

[inline]

ObjexxFCL::FArray2D< Real > const& core::scoring::rna::RNA_FilteredBaseBaseInfo::filtered_base_pair_array

(

)

const [inline]

ObjexxFCL::FArray2D< Real > const& core::scoring::rna::RNA_FilteredBaseBaseInfo::filtered_base_stack_array

(

)

const [inline]

ObjexxFCL::FArray2D< Real >& core::scoring::rna::RNA_FilteredBaseBaseInfo::filtered_base_stack_array

(

)

[inline]

ObjexxFCL::FArray2D< Real > const& core::scoring::rna::RNA_FilteredBaseBaseInfo::filtered_base_stack_axis_array

(

)

const [inline]

ObjexxFCL::FArray2D< Real >& core::scoring::rna::RNA_FilteredBaseBaseInfo::filtered_base_stack_axis_array

(

)

[inline]

ObjexxFCL::FArray2D< Real >& core::scoring::rna::RNA_FilteredBaseBaseInfo::filtered_base_stagger_array

(

)

[inline]

ObjexxFCL::FArray2D< Real > const& core::scoring::rna::RNA_FilteredBaseBaseInfo::filtered_base_stagger_array

(

)

const [inline]

Real core::scoring::rna::RNA_FilteredBaseBaseInfo::get_data_score

(

RNA_DataInfo const &

rna_data_info

)

const

References core::scoring::rna::Base_pair::edge1, core::scoring::rna::Base_pair::edge2, core::scoring::rna::Base_pair::res1, core::scoring::rna::Base_pair::res2, and core::scoring::rna::RNA_DataInfo::rna_data().

Real const& core::scoring::rna::RNA_FilteredBaseBaseInfo::get_total_base_axis_score

(

)

const [inline]

Real const& core::scoring::rna::RNA_FilteredBaseBaseInfo::get_total_base_pair_score

(

)

const [inline]

Real const& core::scoring::rna::RNA_FilteredBaseBaseInfo::get_total_base_stack_axis_score

(

)

const [inline]

Real const& core::scoring::rna::RNA_FilteredBaseBaseInfo::get_total_base_stack_score

(

)

const [inline]

Real const& core::scoring::rna::RNA_FilteredBaseBaseInfo::get_total_base_stagger_score

(

)

const [inline]

void core::scoring::rna::RNA_FilteredBaseBaseInfo::resize

(

Size const &

total_residue

)

Referenced by carry_out_filtering().

bool const& core::scoring::rna::RNA_FilteredBaseBaseInfo::scale_axis_stagger

(

)

const [inline]

Energy_base_pair_list const core::scoring::rna::RNA_FilteredBaseBaseInfo::scored_base_pair_list

(

)

const [inline]

Energy_base_stack_list const core::scoring::rna::RNA_FilteredBaseBaseInfo::scored_base_stack_list

(

)

const [inline]

void core::scoring::rna::RNA_FilteredBaseBaseInfo::set_calculated

(

bool const &

setting

)

[inline]

Referenced by carry_out_filtering().

Size core::scoring::rna::RNA_FilteredBaseBaseInfo::size

(

)

const [inline]

Referenced by protocols::rna::get_number_base_stacks().

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The documentation for this class was generated from the following files:

• src/core/scoring/rna/RNA_FilteredBaseBaseInfo.hh
• src/core/scoring/rna/RNA_FilteredBaseBaseInfo.cc