Rosetta 3.4
Namespaces | Functions
src/protocols/jumping/util.hh File Reference
#include <core/pose/Pose.fwd.hh>
#include <core/kinematics/FoldTree.hh>
#include <protocols/loops/loop_closure/ccd/SlidingWindowLoopClosure.fwd.hh>
#include <core/types.hh>
#include <core/fragment/JumpingFrame.fwd.hh>
#include <protocols/checkpoint/CheckPointer.fwd.hh>
#include <utility/vector1.hh>

Namespaces

namespace  protocols
 

The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.


namespace  protocols::jumping

Functions

bool protocols::jumping::remove_cut (core::Size cutpoint, core::pose::Pose &pose, core::kinematics::FoldTree const &final_fold_tree=core::kinematics::FoldTree())
bool protocols::jumping::remove_cut (core::Size cutpoint, core::kinematics::FoldTree &fold_tree, core::kinematics::FoldTree const &final_fold_tree=core::kinematics::FoldTree())
void protocols::jumping::close_chainbreaks (loops::loop_closure::ccd::SlidingWindowLoopClosureOP closure_protocol, core::pose::Pose &pose, checkpoint::CheckPointer &checkpoint, const std::string &decoy_tag, core::kinematics::FoldTree const &final_fold_tree=core::kinematics::FoldTree())
void protocols::jumping::safe_secstruct (pose::Pose &pose)
void protocols::jumping::get_pleating (pose::Pose const &pose, Size const pos1, Size const pos2, Size &orientation, Size &pleating)
void protocols::jumping::get_pairing_geometry (pose::Pose const &pose, Size const res1, Size const res2, Real &orientation, Real &pleating1, Real &pleating2)
core::fragment::JumpingFrameOP protocols::jumping::generate_empty_jump_frame (Size startpos, Size endpos, Size length)
core::fragment::JumpingFrameOP protocols::jumping::generate_jump_frame (Size startpos, Size endpos, bool bWithTorsion)
void protocols::jumping::assign_ss_dssp (core::pose::Pose &pose)
 Assign secondary structure using DSSP.
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