core::fragment::BBTorsionAndAnglesSRFD Class Reference

#include <BBTorsionAndAnglesSRFD.hh>

Inheritance diagram for core::fragment::BBTorsionAndAnglesSRFD:

Collaboration diagram for core::fragment::BBTorsionAndAnglesSRFD:

List of all members.

Public Member Functions
	BBTorsionAndAnglesSRFD ()
	default constructor
	BBTorsionAndAnglesSRFD (utility::vector1< AngleInfo > &angles_in, Size const nbb_in=3, char secstruct= 'X', char sequence= 'X')
SingleResidueFragDataOP	clone () const
	clone this object
virtual SingleResidueFragDataOP	create () const
	create a new instance of this object
virtual bool	apply (pose::Pose &, Size seq_pos) const
	insert all backbone torsions into pose at position seq_pos
virtual bool	apply (kinematics::MoveMap const &movemap, pose::Pose &pose, Size const seqpos) const
	insert backbone torsions and angles into pose at position seqpos if all bb torsions are moveable in MoveMap
virtual bool	steal (pose::Pose const &, Size seq_pos)
	insert fragment_data into pose at position seq_pos
virtual bool	is_compatible (SingleResidueFragData const &) const
	check weather SRFD applies to same dofs and is of same type
virtual bool	is_applicable (kinematics::MoveMap const &, Size seq_pos) const
virtual void	show (std::ostream &out) const
virtual void	read (std::istream &in)
virtual std::string	type () const
core::Size	nangles () const
Static Public Member Functions
static std::string	_static_type_name ()

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Constructor & Destructor Documentation

core::fragment::BBTorsionAndAnglesSRFD::BBTorsionAndAnglesSRFD

(

)

[inline]

default constructor

Referenced by clone(), and create().

core::fragment::BBTorsionAndAnglesSRFD::BBTorsionAndAnglesSRFD	(	utility::vector1< AngleInfo > &	angles_in,
		Size const	nbb_in = 3,
		char	secstruct = 'X',
		char	sequence = 'X'
	)		[inline]

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Member Function Documentation

static std::string core::fragment::BBTorsionAndAnglesSRFD::_static_type_name

(

)

[inline, static]

Reimplemented from core::fragment::BBTorsionSRFD.

Referenced by type().

bool core::fragment::BBTorsionAndAnglesSRFD::apply	(	pose::Pose &	pose,
		Size	seq_pos
	)		const [virtual]

insert all backbone torsions into pose at position seq_pos

Reimplemented from core::fragment::BBTorsionSRFD.

References core::fragment::BBTorsionSRFD::apply(), core::pose::Pose::conformation(), and core::conformation::Conformation::set_bond_angle().

bool core::fragment::BBTorsionAndAnglesSRFD::apply	(	kinematics::MoveMap const &	movemap,
		pose::Pose &	pose,
		Size const	seqpos
	)		const [virtual]

insert backbone torsions and angles into pose at position seqpos if all bb torsions are moveable in MoveMap

Returns:

True if *all* torsions and angles are inserted and superclass apply() is successful, otherwise False.

Remarks:

This is currently all or nothing -- all torsions for seqpos must be moveable because it's not entirely clear what the behavior of partial angle insertion is. In addition, DOF_IDs are not made explicitly available within this class, meaning there is no way to look them up within the MoveMap; the implementation in this class must be changed if this is desired.

Reimplemented from core::fragment::BBTorsionSRFD.

References core::fragment::BBTorsionSRFD::apply(), core::id::BB, core::pose::Pose::conformation(), core::kinematics::MoveMap::get(), core::fragment::BBTorsionSRFD::nbb(), and core::conformation::Conformation::set_bond_angle().

SingleResidueFragDataOP core::fragment::BBTorsionAndAnglesSRFD::clone

(

)

const [inline, virtual]

clone this object

Reimplemented from core::fragment::BBTorsionSRFD.

References BBTorsionAndAnglesSRFD().

virtual SingleResidueFragDataOP core::fragment::BBTorsionAndAnglesSRFD::create

(

)

const [inline, virtual]

create a new instance of this object

Reimplemented from core::fragment::BBTorsionSRFD.

References BBTorsionAndAnglesSRFD().

bool core::fragment::BBTorsionAndAnglesSRFD::is_applicable	(	kinematics::MoveMap const &	move_map,
		Size	seqpos
	)		const [virtual]

there is no information in the MoveMap as to which angles can be moved, so this function

will return its value solely based on the parent

Reimplemented from core::fragment::BBTorsionSRFD.

References core::fragment::BBTorsionSRFD::is_applicable().

bool core::fragment::BBTorsionAndAnglesSRFD::is_compatible

(

SingleResidueFragData const &

)

const [virtual]

check weather SRFD applies to same dofs and is of same type

Reimplemented from core::fragment::BBTorsionSRFD.

References nangles(), and core::fragment::BBTorsionSRFD::nbb().

core::Size core::fragment::BBTorsionAndAnglesSRFD::nangles

(

)

const [inline]

Referenced by is_compatible().

void core::fragment::BBTorsionAndAnglesSRFD::read

(

std::istream &

in

)

[virtual]

References core::fragment::BBTorsionSRFD::read_data().

void core::fragment::BBTorsionAndAnglesSRFD::show

(

std::ostream &

out

)

const [virtual]

Reimplemented from core::fragment::BBTorsionSRFD.

References core::fragment::BBTorsionSRFD::show().

bool core::fragment::BBTorsionAndAnglesSRFD::steal	(	pose::Pose const &	pose,
		Size	seq_pos
	)		[virtual]

insert fragment_data into pose at position seq_pos

Reimplemented from core::fragment::BBTorsionSRFD.

References core::conformation::Conformation::bond_angle(), core::pose::Pose::conformation(), and core::fragment::BBTorsionSRFD::steal().

virtual std::string core::fragment::BBTorsionAndAnglesSRFD::type

(

)

const [inline, virtual]

Reimplemented from core::fragment::BBTorsionSRFD.

References _static_type_name().

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The documentation for this class was generated from the following files:

• src/core/fragment/BBTorsionAndAnglesSRFD.hh
• src/core/fragment/BBTorsionAndAnglesSRFD.cc