Rosetta 3.4
Namespaces | Typedefs | Enumerations | Functions
src/core/scoring/ScoreType.hh File Reference

Score type enumeration. More...

#include <iostream>
#include <utility/vector1.hh>

Namespaces

namespace  core
 

A class for defining atom parameters, known as atom_types.


namespace  core::scoring

Typedefs

typedef utility::vector1
< ScoreType > 
core::scoring::ScoreTypes

Enumerations

enum  core::scoring::ScoreType {
  core::scoring::fa_atr = 1, core::scoring::fa_rep, core::scoring::fa_sol, core::scoring::fa_intra_atr,
  core::scoring::fa_intra_rep, core::scoring::fa_intra_sol, core::scoring::fa_intra_RNA_base_phos_atr, core::scoring::fa_intra_RNA_base_phos_rep,
  core::scoring::fa_intra_RNA_base_phos_sol, core::scoring::lk_hack, core::scoring::lk_ball, core::scoring::lk_ball_iso,
  core::scoring::coarse_fa_atr, core::scoring::coarse_fa_rep, core::scoring::coarse_fa_sol, core::scoring::coarse_beadlj,
  core::scoring::mm_lj_intra_rep, core::scoring::mm_lj_intra_atr, core::scoring::mm_lj_inter_rep, core::scoring::mm_lj_inter_atr,
  core::scoring::mm_twist, core::scoring::mm_bend, core::scoring::mm_stretch, core::scoring::lk_costheta,
  core::scoring::lk_polar, core::scoring::lk_nonpolar, core::scoring::lk_polar_intra_RNA, core::scoring::lk_nonpolar_intra_RNA,
  core::scoring::hack_elec, core::scoring::hack_elec_bb_bb, core::scoring::hack_elec_bb_sc, core::scoring::hack_elec_sc_sc,
  core::scoring::h2o_hbond, core::scoring::dna_dr, core::scoring::dna_bp, core::scoring::dna_bs,
  core::scoring::peptide_bond, core::scoring::pcs, core::scoring::pcs2, core::scoring::fastsaxs,
  core::scoring::saxs_score, core::scoring::saxs_cen_score, core::scoring::saxs_fa_score, core::scoring::pddf_score,
  core::scoring::fa_mbenv, core::scoring::fa_mbsolv, core::scoring::hack_elec_rna_phos_phos, core::scoring::hack_elec_rna_phos_sugr,
  core::scoring::hack_elec_rna_phos_base, core::scoring::hack_elec_rna_sugr_sugr, core::scoring::hack_elec_rna_sugr_base, core::scoring::hack_elec_rna_base_base,
  core::scoring::hack_elec_aro_aro, core::scoring::hack_elec_aro_all, core::scoring::hack_aro, core::scoring::rna_fa_atr_base,
  core::scoring::rna_fa_rep_base, core::scoring::rna_data_backbone, core::scoring::ch_bond, core::scoring::ch_bond_bb_bb,
  core::scoring::ch_bond_sc_sc, core::scoring::ch_bond_bb_sc, core::scoring::pro_close, core::scoring::rama2b,
  core::scoring::vdw, core::scoring::cenpack, core::scoring::cenpack_smooth, core::scoring::cen_hb,
  core::scoring::hybrid_vdw, core::scoring::rna_vdw, core::scoring::rna_base_backbone, core::scoring::rna_backbone_backbone,
  core::scoring::rna_repulsive, core::scoring::rna_base_pair_pairwise, core::scoring::rna_base_axis_pairwise, core::scoring::rna_base_stagger_pairwise,
  core::scoring::rna_base_stack_pairwise, core::scoring::rna_base_stack_axis_pairwise, core::scoring::rna_data_base, core::scoring::rna_base_pair,
  core::scoring::rna_base_axis, core::scoring::rna_base_stagger, core::scoring::rna_base_stack, core::scoring::rna_base_stack_axis,
  core::scoring::rna_torsion, core::scoring::rna_sugar_close, core::scoring::fa_stack, core::scoring::fa_stack_aro,
  core::scoring::CI_geom_sol, core::scoring::CI_geom_sol_intra_RNA, core::scoring::fa_cust_pair_dist, core::scoring::custom_atom_pair,
  core::scoring::orbitals_hpol, core::scoring::orbitals_haro, core::scoring::orbitals_orbitals, core::scoring::orbitals_hpol_bb,
  core::scoring::PyRosettaTwoBodyContextIndepenedentEnergy_first, core::scoring::PyRosettaTwoBodyContextIndepenedentEnergy_last = PyRosettaTwoBodyContextIndepenedentEnergy_first + 10, core::scoring::python, core::scoring::n_ci_2b_score_types = python,
  core::scoring::fa_pair, core::scoring::fa_pair_aro_aro, core::scoring::fa_pair_aro_pol, core::scoring::fa_pair_pol_pol,
  core::scoring::fa_plane, core::scoring::hbond_sr_bb, core::scoring::hbond_lr_bb, core::scoring::hbond_bb_sc,
  core::scoring::hbond_sr_bb_sc, core::scoring::hbond_lr_bb_sc, core::scoring::hbond_sc, core::scoring::hbond_intra,
  core::scoring::PyRosettaTwoBodyContextDependentEnergy_first, core::scoring::PyRosettaTwoBodyContextDependentEnergy_last = PyRosettaTwoBodyContextDependentEnergy_first + 10, core::scoring::interface_dd_pair, core::scoring::geom_sol,
  core::scoring::geom_sol_intra_RNA, core::scoring::occ_sol_fitted, core::scoring::occ_sol_fitted_onebody, core::scoring::occ_sol_exact,
  core::scoring::pair, core::scoring::cen_pair_smooth, core::scoring::Mpair, core::scoring::suck,
  core::scoring::rna_rg, core::scoring::interchain_pair, core::scoring::interchain_vdw, core::scoring::n_shortranged_2b_score_types = interchain_vdw,
  core::scoring::gb_elec, core::scoring::dslf_ss_dst, core::scoring::dslf_cs_ang, core::scoring::dslf_ss_dih,
  core::scoring::dslf_ca_dih, core::scoring::dslf_cbs_ds, core::scoring::dslfc_cen_dst, core::scoring::dslfc_cb_dst,
  core::scoring::dslfc_ang, core::scoring::dslfc_cb_dih, core::scoring::dslfc_bb_dih, core::scoring::dslfc_rot,
  core::scoring::dslfc_trans, core::scoring::dslfc_RT, core::scoring::atom_pair_constraint, core::scoring::constant_constraint,
  core::scoring::coordinate_constraint, core::scoring::angle_constraint, core::scoring::dihedral_constraint, core::scoring::big_bin_constraint,
  core::scoring::dunbrack_constraint, core::scoring::site_constraint, core::scoring::rna_bond_geometry, core::scoring::rama,
  core::scoring::omega, core::scoring::fa_dun, core::scoring::p_aa_pp, core::scoring::yhh_planarity,
  core::scoring::h2o_intra, core::scoring::ref, core::scoring::seqdep_ref, core::scoring::envsmooth,
  core::scoring::e_pH, core::scoring::rna_bulge, core::scoring::special_rot, core::scoring::PB_elec,
  core::scoring::cen_env_smooth, core::scoring::cbeta_smooth, core::scoring::env, core::scoring::cbeta,
  core::scoring::DFIRE, core::scoring::Menv, core::scoring::Mcbeta, core::scoring::Menv_non_helix,
  core::scoring::Menv_termini, core::scoring::Menv_tm_proj, core::scoring::Mlipo, core::scoring::rg,
  core::scoring::co, core::scoring::hs_pair, core::scoring::ss_pair, core::scoring::rsigma,
  core::scoring::sheet, core::scoring::burial, core::scoring::abego, core::scoring::natbias_ss,
  core::scoring::natbias_hs, core::scoring::natbias_hh, core::scoring::natbias_stwist, core::scoring::aa_cmp,
  core::scoring::dock_ens_conf, core::scoring::rdc, core::scoring::rdc_segments, core::scoring::rdc_rohl,
  core::scoring::holes, core::scoring::holes_decoy, core::scoring::holes_resl, core::scoring::holes_min,
  core::scoring::holes_min_mean, core::scoring::dab_sasa, core::scoring::dab_sev, core::scoring::sa,
  core::scoring::interchain_env, core::scoring::interchain_contact, core::scoring::chainbreak, core::scoring::linear_chainbreak,
  core::scoring::overlap_chainbreak, core::scoring::distance_chainbreak, core::scoring::dof_constraint, core::scoring::cart_bonded,
  core::scoring::cart_bonded_angle, core::scoring::cart_bonded_length, core::scoring::cart_bonded_torsion, core::scoring::neigh_vect,
  core::scoring::neigh_count, core::scoring::neigh_vect_raw, core::scoring::symE_bonus, core::scoring::sym_lig,
  core::scoring::pack_stat, core::scoring::rms, core::scoring::res_type_constraint, core::scoring::res_type_linking_constraint,
  core::scoring::pocket_constraint, core::scoring::backbone_stub_constraint, core::scoring::surface, core::scoring::p_aa,
  core::scoring::unfolded, core::scoring::elec_dens_fast, core::scoring::elec_dens_window, core::scoring::elec_dens_whole_structure_ca,
  core::scoring::elec_dens_whole_structure_allatom, core::scoring::elec_dens_atomwise, core::scoring::patterson_cc, core::scoring::hpatch,
  core::scoring::Menv_smooth, core::scoring::PyRosettaEnergy_first, core::scoring::PyRosettaEnergy_last = PyRosettaEnergy_first + 10, core::scoring::total_score,
  core::scoring::n_score_types = total_score, core::scoring::end_of_score_type_enumeration = total_score
}
 Type for looking up cached energies I guess we could get rid of the fa_ prefix, except maybe for fa_pair, to distinguish from std::pair and the centroid pair score... More...

Functions

ScoreType core::scoring::score_type_from_name (std::string const &name)
 give a ScoreType string name and return its enum type
std::string core::scoring::name_from_score_type (ScoreType score_type)
 Returns the name of the ScoreType <score_type>
std::istream & core::scoring::operator>> (std::istream &is, ScoreType &score_type)
 input operator for ScoreType enum type
std::ostream & core::scoring::operator<< (std::ostream &os, ScoreType const &score_type)
 output operator for ScoreType enum type
std::ostream & core::scoring::operator<< (std::ostream &os, ScoreTypes const &score_types)
 output operator for ScoreTypes list type

Detailed Description

Score type enumeration.

Author:
Phil Bradley
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